Schema for mrnaOrientInfo
  Database: papHam1    Primary Table: mrnaOrientInfo    Row Count: 1,747   Data last updated: 2020-05-06
Format description: Extra information on ESTs - calculated by polyInfo program
On download server: MariaDB table dump directory
fieldexampleSQL type info description
bin 585smallint(5) unsigned range Indexing field to speed chromosome range queries.
chrom Contig118087varchar(255) values Reference sequence chromosome or scaffold
chromStart 120int(10) unsigned range Start position in chromosome
chromEnd 335int(10) unsigned range End position in chromosome
name KP893574varchar(255) values Accession of EST
intronOrientation 0smallint(6) range Orientation of introns with respect to EST
sizePolyA 1smallint(6) range Number of trailing A's
revSizePolyA 0smallint(6) range Number of trailing A's on reverse strand
signalPos 0smallint(6) range Position of start of polyA signal relative to end of EST or 0 if no signal
revSignalPos 0smallint(6) range PolyA signal position on reverse strand if any

Connected Tables and Joining Fields
        hgFixed.gbCdnaInfo.acc (via mrnaOrientInfo.name)
      hgFixed.gbSeq.acc (via mrnaOrientInfo.name)
      hgFixed.imageClone.acc (via mrnaOrientInfo.name)
      hgFixed.refLink.mrnaAcc (via mrnaOrientInfo.name)
      hgFixed.refSeqStatus.mrnaAcc (via mrnaOrientInfo.name)
      hgFixed.refSeqSummary.mrnaAcc (via mrnaOrientInfo.name)
      knownGeneV39.kgXref.refseq (via mrnaOrientInfo.name)
      knownGeneV39.knownToRefSeq.value (via mrnaOrientInfo.name)
      papHam1.all_mrna.qName (via mrnaOrientInfo.name)
      papHam1.refFlat.name (via mrnaOrientInfo.name)
      papHam1.refGene.name (via mrnaOrientInfo.name)
      papHam1.refSeqAli.qName (via mrnaOrientInfo.name)

Sample Rows
 
binchromchromStartchromEndnameintronOrientationsizePolyArevSizePolyAsignalPosrevSignalPos
585Contig118087120335KP89357401000
585Contig118087120335KP89358000000
585Contig118087120335KP89359501000
585Contig118087120335LN85217800000
585Contig118087120337KP89358501000
585Contig118087120337KP89358801000
585Contig118087120337KP89359101000
585Contig118087120337KP89360201000
585Contig118087120337KR15075101000
585Contig1202044811077EU85638241000

Note: all start coordinates in our database are 0-based, not 1-based. See explanation here.