Schema for intronEst
  Database: petMar1    Primary Table: intronEst    Row Count: 37,707   Data last updated: 2011-03-30
Format description: Summary info about a patSpace alignment
On download server: MariaDB table dump directory
fieldexampleSQL type info description
bin 585smallint(5) unsigned range Indexing field to speed chromosome range queries.
matches 168int(10) unsigned range Number of bases that match that aren't repeats
misMatches 2int(10) unsigned range Number of bases that don't match
repMatches 0int(10) unsigned range Number of bases that match but are part of repeats
nCount 4int(10) unsigned range Number of 'N' bases
qNumInsert 1int(10) unsigned range Number of inserts in query
qBaseInsert 4int(10) unsigned range Number of bases inserted in query
tNumInsert 7int(10) unsigned range Number of inserts in target
tBaseInsert 180int(10) unsigned range Number of bases inserted in target
strand +char(2) values + or - for strand. First character query, second target (optional)
qName AA618646varchar(255) values Query sequence name
qSize 287int(10) unsigned range Query sequence size
qStart 48int(10) unsigned range Alignment start position in query
qEnd 226int(10) unsigned range Alignment end position in query
tName Contig17331varchar(255) values Target sequence name
tSize 20038int(10) unsigned range Target sequence size
tStart 13537int(10) unsigned range Alignment start position in target
tEnd 13891int(10) unsigned range Alignment end position in target
blockCount 8int(10) unsigned range Number of blocks in alignment
blockSizes 4,6,4,7,11,62,56,24,longblob   Size of each block
qStarts 48,52,58,62,69,80,142,202,longblob   Start of each block in query.
tStarts 13537,13542,13549,13554,135...longblob   Start of each block in target.

Connected Tables and Joining Fields
        hgFixed.gbCdnaInfo.acc (via intronEst.qName)
      hgFixed.gbSeq.acc (via intronEst.qName)
      hgFixed.imageClone.acc (via intronEst.qName)
      petMar1.all_est.qName (via intronEst.qName)
      petMar1.estOrientInfo.name (via intronEst.qName)

Sample Rows
 
binmatchesmisMatchesrepMatchesnCountqNumInsertqBaseInserttNumInserttBaseInsertstrandqNameqSizeqStartqEndtNametSizetStarttEndblockCountblockSizesqStartstStarts
585168204147180+AA61864628748226Contig1733120038135371389184,6,4,7,11,62,56,24,48,52,58,62,69,80,142,202,13537,13542,13549,13554,13562,13574,13809,13867,
585163001113119+AA61864725145210Contig1733120038138111409457,8,66,50,33,45,52,60,126,177,13811,13819,13828,14011,14061,
5852442034552293-AA6186492910254Contig279821329375321007495,24,42,100,37,13,11,7,10,37,44,69,112,212,250,263,274,281,7532,7537,7561,7603,9991,10030,10044,10056,10064,
5852451034552290+AA6186492910254Contig2809113752764110180910,7,11,13,37,100,44,22,5,0,10,17,28,42,79,180,225,249,7641,7652,7660,7672,7687,10009,10109,10153,10175,
585124102004176-AA61864522883210Contig33621827441844487526,68,11,9,13,18,44,112,123,132,4184,4382,4451,4463,4474,
585163001113119-AA61864725145210Contig3931312291005410337534,49,66,8,7,41,76,125,191,199,10054,10088,10254,10321,10330,
585168204147180-AA61864628748226Contig3931312291025710611824,56,61,12,7,4,6,4,61,89,145,206,218,225,229,235,10257,10283,10512,10574,10587,10595,10600,10607,
585163001113120+AA61864725145210Contig393131229274712775557,8,66,50,33,45,52,60,126,177,27471,27479,27488,27672,27722,
58523400431173090-AA6186482854253Contig469611042133966724811,109,63,20,5,8,8,14,32,52,161,225,246,251,259,267,3396,3415,6599,6664,6686,6692,6701,6710,
585168204147180-AA61864628748226Contig68823505244154769824,56,61,12,7,4,6,4,61,89,145,206,218,225,229,235,4415,4441,4670,4732,4745,4753,4758,4765,

Note: all start coordinates in our database are 0-based, not 1-based. See explanation here.