Schema for mrnaOrientInfo
  Database: petMar2    Primary Table: mrnaOrientInfo    Row Count: 3,712   Data last updated: 2020-08-22
Format description: Extra information on ESTs - calculated by polyInfo program
On download server: MariaDB table dump directory
fieldexampleSQL type info description
bin 585smallint(5) unsigned range Indexing field to speed chromosome range queries.
chrom GL476332varchar(255) values Reference sequence chromosome or scaffold
chromStart 20633int(10) unsigned range Start position in chromosome
chromEnd 20733int(10) unsigned range End position in chromosome
name EF094670varchar(255) values Accession of EST
intronOrientation 0smallint(6) range Orientation of introns with respect to EST
sizePolyA 1smallint(6) range Number of trailing A's
revSizePolyA 0smallint(6) range Number of trailing A's on reverse strand
signalPos 0smallint(6) range Position of start of polyA signal relative to end of EST or 0 if no signal
revSignalPos 0smallint(6) range PolyA signal position on reverse strand if any

Connected Tables and Joining Fields
        hgFixed.gbCdnaInfo.acc (via mrnaOrientInfo.name)
      hgFixed.gbSeq.acc (via mrnaOrientInfo.name)
      hgFixed.imageClone.acc (via mrnaOrientInfo.name)
      hgFixed.refLink.mrnaAcc (via mrnaOrientInfo.name)
      hgFixed.refSeqStatus.mrnaAcc (via mrnaOrientInfo.name)
      hgFixed.refSeqSummary.mrnaAcc (via mrnaOrientInfo.name)
      knownGeneV39.kgXref.refseq (via mrnaOrientInfo.name)
      knownGeneV39.knownToRefSeq.value (via mrnaOrientInfo.name)
      petMar2.all_mrna.qName (via mrnaOrientInfo.name)

Sample Rows
 
binchromchromStartchromEndnameintronOrientationsizePolyArevSizePolyAsignalPosrevSignalPos
585GL4763322063320733EF09467001000
586GL476332154003216614AY74491916190400
586GL476332154421215696JN159936160000
586GL476332185407191817AF12947531100
599GL47633518487801877975EU57120840000
599GL47633518532371855690EU57120810000
585GL476350848724315AF192380900100
585GL4763501394122489AF42473360000
588GL476350400901424818DQ136024200000
585GL4763602179932077FP24332510100

Note: all start coordinates in our database are 0-based, not 1-based. See explanation here.