Schema for estOrientInfo
  Database: petMar3    Primary Table: estOrientInfo    Row Count: 157,672   Data last updated: 2018-03-13
Format description: Extra information on ESTs - calculated by polyInfo program
On download server: MariaDB table dump directory
fieldexampleSQL type info description
bin 665smallint(5) unsigned range Indexing field to speed chromosome range queries.
chrom PIZI01000003v1varchar(255) values Reference sequence chromosome or scaffold
chromStart 10565216int(10) unsigned range Start position in chromosome
chromEnd 10570769int(10) unsigned range End position in chromosome
name AA618656varchar(255) values Accession of EST
intronOrientation 0smallint(6) range Orientation of introns with respect to EST
sizePolyA 3smallint(6) range Number of trailing A's
revSizePolyA 0smallint(6) range Number of trailing A's on reverse strand
signalPos 0smallint(6) range Position of start of polyA signal relative to end of EST or 0 if no signal
revSignalPos 0smallint(6) range PolyA signal position on reverse strand if any

Connected Tables and Joining Fields
        hgFixed.gbCdnaInfo.acc (via estOrientInfo.name)
      hgFixed.gbSeq.acc (via estOrientInfo.name)
      hgFixed.imageClone.acc (via estOrientInfo.name)
      petMar3.all_est.qName (via estOrientInfo.name)
      petMar3.intronEst.qName (via estOrientInfo.name)

Sample Rows
 
binchromchromStartchromEndnameintronOrientationsizePolyArevSizePolyAsignalPosrevSignalPos
665PIZI01000003v11056521610570769AA61865603000
675PIZI01000016v11191022511910536AA61865700000
606PIZI01000019v128366962836973AA61865500000
592PIZI01000020v19578561030338AA618646-10000
592PIZI01000020v1957907958209AA61864510100
592PIZI01000020v1989305990046AA61864810100
592PIZI01000020v110456721046026AA61864600000
597PIZI01000022v116719821672281AA61865200000
595PIZI01000026v114187941419091AA61865300000
602PIZI01000030v122497202252263AA61864910000

Note: all start coordinates in our database are 0-based, not 1-based. See explanation here.