Schema for xenoRefFlat
  Database: petMar3    Primary Table: xenoRefFlat    Row Count: 200,903   Data last updated: 2020-08-19
Format description: A gene prediction with additional geneName field.
On download server: MariaDB table dump directory
fieldexampleSQL type info description
geneName Kcnh1varchar(255) values Name of gene as it appears in genome browser.
name NM_010600varchar(255) values Name of gene
chrom PIZI01000025v1varchar(255) values Reference sequence chromosome or scaffold
strand -char(1) values + or - for strand
txStart 8174085int(10) unsigned range Transcription start position (or end position for minus strand item)
txEnd 8318721int(10) unsigned range Transcription end position (or start position for minus strand item)
cdsStart 8174085int(10) unsigned range Coding region start (or end position for minus strand item)
cdsEnd 8318721int(10) unsigned range Coding region end (or start position for minus strand item)
exonCount 15int(10) unsigned range Number of exons
exonStarts 8174085,8174166,8174761,821...longblob   Exon start positions (or end positions for minus strand item)
exonEnds 8174139,8174247,8174908,821...longblob   Exon end positions (or start positions for minus strand item)

Connected Tables and Joining Fields
        hgFixed.gbCdnaInfo.acc (via xenoRefFlat.name)
      hgFixed.gbSeq.acc (via xenoRefFlat.name)
      hgFixed.imageClone.acc (via xenoRefFlat.name)
      petMar3.xenoRefGene.name (via xenoRefFlat.name)
      petMar3.xenoRefSeqAli.qName (via xenoRefFlat.name)

Sample Rows
 
geneNamenamechromstrandtxStarttxEndcdsStartcdsEndexonCountexonStartsexonEnds
Kcnh1NM_010600PIZI01000025v1-8174085831872181740858318721158174085,8174166,8174761,8211268,8220997,8240728,8240978,8241235,8254166,8258621,8270154,8280163,8283321,8307454,8318655,8174139,8174247,8174908,8211523,8221195,8240732,8241202,8241409,8254559,8258735,8270278,8280170,8283427,8307575,8318721,
Kcnh1NM_010600PIZI01000036v1+108305001086547510830500108654751910830500,10838999,10842292,10845370,10847382,10849880,10853925,10855060,10855597,10855684,10856128,10858318,10860493,10862260,10 ...10830569,10839126,10842405,10845499,10847499,10850280,10854110,10855067,10855678,10855829,10856130,10858516,10860744,10862461,10 ...
HSPD1NM_001012916PIZI01000028v1+126728091268007012672809126800701112672809,12673998,12675354,12676190,12676836,12677058,12677518,12678094,12679005,12679468,12679980,12672917,12674251,12675437,12676286,12676928,12677227,12677620,12678325,12679149,12679642,12680070,
PCCANM_001352605PIZI01000055v1+2488743250671524887432506715172488743,2488950,2489738,2491358,2491849,2491907,2492796,2493923,2494640,2495198,2495527,2495864,2496551,2497152,2498918,2505855, ...2488791,2489013,2489834,2491403,2491906,2491973,2492821,2493998,2494746,2495267,2495674,2496008,2496620,2497218,2499032,2505909, ...
SCN2ANM_001371246PIZI01000028v1-994981310014120994981310014120229949813,9950231,9951637,9953547,9956445,9957265,9958992,9959850,9962062,9963549,9964701,9969712,9978703,9981514,9981816,9992819, ...9950230,9950732,9951901,9953649,9956574,9957271,9959049,9960132,9962185,9963723,9964818,9970069,9978886,9981517,9982053,9993014, ...
lmnaNM_152971PIZI01000006v1+18821013188476571882101318847657518821013,18843994,18845277,18846592,18847570,18821103,18844099,18845409,18846793,18847657,
lmnaNM_152971PIZI01000013v1-10350753103599451035075310359945310350753,10351703,10359828,10350864,10351901,10359945,
RIMBP2NM_015347PIZI01000038v1-2783002281618227874102815264162783002,2787410,2788423,2790730,2795483,2795777,2796958,2800632,2803883,2805092,2806459,2806872,2811012,2815130,2815162,2816152,2783044,2787482,2788492,2790844,2795590,2795877,2796982,2800677,2804009,2805185,2806529,2806982,2811108,2815133,2815267,2816182,
MMN10.3NM_001345379PIZI01005314v1+290531992905319932905,3092,3175,3091,3175,3199,
MMN10.3NM_001345379PIZI01005748v1+3386503386501338,650,

Note: all start coordinates in our database are 0-based, not 1-based. See explanation here.