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Database: ponAbe3 Primary Table: all_est Row Count: 50,531 Data last updated: 2018-03-29
Format description: Summary info about a patSpace alignment
On download server: MariaDB table dump directory
| field | example | SQL type | info | description |
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| bin | 585 | smallint(5) unsigned | range | Indexing field to speed chromosome range queries. |
| matches | 436 | int(10) unsigned | range | Number of bases that match that aren't repeats |
| misMatches | 4 | int(10) unsigned | range | Number of bases that don't match |
| repMatches | 0 | int(10) unsigned | range | Number of bases that match but are part of repeats |
| nCount | 18 | int(10) unsigned | range | Number of 'N' bases |
| qNumInsert | 1 | int(10) unsigned | range | Number of inserts in query |
| qBaseInsert | 1 | int(10) unsigned | range | Number of bases inserted in query |
| tNumInsert | 2 | int(10) unsigned | range | Number of inserts in target |
| tBaseInsert | 13902 | int(10) unsigned | range | Number of bases inserted in target |
| strand | - | char(2) | values | + or - for strand. First character query, second target (optional) |
| qName | CR791558 | varchar(255) | values | Query sequence name |
| qSize | 459 | int(10) unsigned | range | Query sequence size |
| qStart | 0 | int(10) unsigned | range | Alignment start position in query |
| qEnd | 459 | int(10) unsigned | range | Alignment end position in query |
| tName | chr1 | varchar(255) | values | Target sequence name |
| tSize | 227913704 | int(10) unsigned | range | Target sequence size |
| tStart | 3477 | int(10) unsigned | range | Alignment start position in target |
| tEnd | 17837 | int(10) unsigned | range | Alignment end position in target |
| blockCount | 4 | int(10) unsigned | range | Number of blocks in alignment |
| blockSizes | 106,224,64,64, | longblob | | Size of each block |
| qStarts | 0,107,331,395, | longblob | | Start of each block in query. |
| tStarts | 3477,3583,7403,17773, | longblob | | Start of each block in target. |
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Connected Tables and Joining Fields
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Sample Rows
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| bin | matches | misMatches | repMatches | nCount | qNumInsert | qBaseInsert | tNumInsert | tBaseInsert | strand | qName | qSize | qStart | qEnd | tName | tSize | tStart | tEnd | blockCount | blockSizes | qStarts | tStarts |
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| 585 | 436 | 4 | 0 | 18 | 1 | 1 | 2 | 13902 | - | CR791558 | 459 | 0 | 459 | chr1 | 227913704 | 3477 | 17837 | 4 | 106,224,64,64, | 0,107,331,395, | 3477,3583,7403,17773, |
| 585 | 205 | 1 | 0 | 0 | 0 | 0 | 0 | 0 | + | CR787192 | 210 | 4 | 210 | chr1 | 227913704 | 66737 | 66943 | 1 | 206, | 4, | 66737, |
| 585 | 750 | 8 | 0 | 3 | 1 | 1 | 3 | 1154 | + | CR765535 | 762 | 0 | 762 | chr1 | 227913704 | 67049 | 68964 | 5 | 405,49,90,189,28, | 0,405,454,544,734, | 67049,68138,68316,68747,68936, |
| 585 | 621 | 6 | 0 | 0 | 1 | 1 | 1 | 343 | + | CR539117 | 629 | 1 | 629 | chr1 | 227913704 | 97657 | 98627 | 3 | 41,558,28, | 1,42,601, | 97657,98041,98599, |
| 591 | 630 | 1 | 0 | 0 | 0 | 0 | 0 | 0 | + | CR542427 | 644 | 13 | 644 | chr1 | 227913704 | 907281 | 907912 | 1 | 631, | 13, | 907281, |
| 591 | 428 | 1 | 0 | 0 | 0 | 0 | 0 | 0 | + | CR766100 | 429 | 0 | 429 | chr1 | 227913704 | 907342 | 907771 | 1 | 429, | 0, | 907342, |
| 592 | 428 | 1 | 0 | 0 | 0 | 0 | 0 | 0 | - | CR766100 | 429 | 0 | 429 | chr1 | 227913704 | 952480 | 952909 | 1 | 429, | 0, | 952480, |
| 595 | 663 | 3 | 0 | 0 | 2 | 4 | 0 | 0 | + | CR543026 | 670 | 0 | 670 | chr1 | 227913704 | 1342090 | 1342756 | 3 | 212,188,266, | 0,213,404, | 1342090,1342302,1342490, |
| 596 | 428 | 1 | 0 | 0 | 0 | 0 | 0 | 0 | + | CR766100 | 429 | 0 | 429 | chr1 | 227913704 | 1467079 | 1467508 | 1 | 429, | 0, | 1467079, |
| 596 | 508 | 1 | 0 | 0 | 0 | 0 | 2 | 2 | - | CR540994 | 509 | 0 | 509 | chr1 | 227913704 | 1467858 | 1468369 | 3 | 127,308,74, | 0,127,435, | 1467858,1467986,1468295, |
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Note: all start coordinates in our database are 0-based, not
1-based. See explanation
here.
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US Server