Schema for xenoMrna
  Database: rheMac3    Primary Table: xenoMrna    Row Count: 6,915,640   Data last updated: 2020-08-22
Format description: Summary info about a patSpace alignment
On download server: MariaDB table dump directory
fieldexampleSQL type description
bin 585smallint(5) unsigned Indexing field to speed chromosome range queries.
matches 1374int(10) unsigned Number of bases that match that aren't repeats
misMatches 47int(10) unsigned Number of bases that don't match
repMatches 0int(10) unsigned Number of bases that match but are part of repeats
nCount 0int(10) unsigned Number of 'N' bases
qNumInsert 4int(10) unsigned Number of inserts in query
qBaseInsert 444int(10) unsigned Number of bases inserted in query
tNumInsert 2int(10) unsigned Number of inserts in target
tBaseInsert 368int(10) unsigned Number of bases inserted in target
strand +-char(2) + or - for strand. First character query, second target (optional)
qName BC142625varchar(255) Query sequence name
qSize 2174int(10) unsigned Query sequence size
qStart 262int(10) unsigned Alignment start position in query
qEnd 2127int(10) unsigned Alignment end position in query
tName chr1varchar(255) Target sequence name
tSize 229590362int(10) unsigned Target sequence size
tStart 61043int(10) unsigned Alignment start position in target
tEnd 62832int(10) unsigned Alignment end position in target
blockCount 6int(10) unsigned Number of blocks in alignment
blockSizes 11,651,299,275,146,39,longblob Size of each block
qStarts 262,279,1365,1666,1941,2088,longblob Start of each block in query.
tStarts 229527530,229527541,2295285...longblob Start of each block in target.

Connected Tables and Joining Fields
        hgFixed.gbCdnaInfo.acc (via xenoMrna.qName)
      hgFixed.gbMiscDiff.acc (via xenoMrna.qName)
      hgFixed.gbSeq.acc (via xenoMrna.qName)
      hgFixed.gbWarn.acc (via xenoMrna.qName)
      hgFixed.imageClone.acc (via xenoMrna.qName)
      rheMac3.all_est.qName (via xenoMrna.qName)
      rheMac3.all_mrna.qName (via xenoMrna.qName)
      rheMac3.refGene.name (via xenoMrna.qName)
      rheMac3.refSeqAli.qName (via xenoMrna.qName)
      rheMac3.xenoRefFlat.name (via xenoMrna.qName)
      rheMac3.xenoRefGene.name (via xenoMrna.qName)
      rheMac3.xenoRefSeqAli.qName (via xenoMrna.qName)

Sample Rows
 
binmatchesmisMatchesrepMatchesnCountqNumInsertqBaseInserttNumInserttBaseInsertstrandqNameqSizeqStartqEndtNametSizetStarttEndblockCountblockSizesqStartstStarts
5851374470044442368+-BC14262521742622127chr12295903626104362832611,651,299,275,146,39,262,279,1365,1666,1941,2088,229527530,229527541,229528559,229528858,229529134,229529280,
585362410042505354+-JU54500074875728chr122959036261046618037237,6,17,8,57,42,36,75,409,415,437,445,649,692,229528559,229528951,229528958,229528982,229528991,229529238,229529280,
5852686800325125+-JU17863838119380chr122959036261055614164102,151,56,27,19,122,296,353,229528946,229529048,229529224,229529280,
585930320024381367+-J038531491911491chr12295903626150362832329,633,300,91,126,1191,229527530,229527559,229528559,
5856761470015021368+-U043101492871412chr122959036261568627592588,235,87,1177,229527603,229528559,
585786860014231367+-M5831617041741469chr122959036261568628072637,235,174,1234,229527555,229528559,
58522211000000+-JU296495380111344chr122959036261570618031233,111,229528559,
585501350025302465+-DQ225117106601066chr122959036261570625713191,112,233,0,289,833,229527791,229528080,229528559,
585748450014261367+-AY156930121901219chr122959036261570627302560,233,0,986,229527632,229528559,
585776940014231367+-BC17263714381181411chr122959036261570628072637,233,118,1178,229527555,229528559,

Note: all start coordinates in our database are 0-based, not 1-based. See explanation here.