Schema for estOrientInfo
  Database: rheMac8    Primary Table: estOrientInfo    Row Count: 63,489   Data last updated: 2016-04-03
Format description: Extra information on ESTs - calculated by polyInfo program
On download server: MariaDB table dump directory
fieldexampleSQL type info description
bin 1083smallint(5) unsigned range Indexing field to speed chromosome range queries.
chrom chr1varchar(255) values Reference sequence chromosome or scaffold
chromStart 65354810int(10) unsigned range Start position in chromosome
chromEnd 65368747int(10) unsigned range End position in chromosome
name AB471888varchar(255) values Accession of EST
intronOrientation 3smallint(6) range Orientation of introns with respect to EST
sizePolyA 0smallint(6) range Number of trailing A's
revSizePolyA 0smallint(6) range Number of trailing A's on reverse strand
signalPos 0smallint(6) range Position of start of polyA signal relative to end of EST or 0 if no signal
revSignalPos 0smallint(6) range PolyA signal position on reverse strand if any

Connected Tables and Joining Fields
        hgFixed.gbCdnaInfo.acc (via estOrientInfo.name)
      hgFixed.gbSeq.acc (via estOrientInfo.name)
      hgFixed.imageClone.acc (via estOrientInfo.name)
      rheMac8.all_est.qName (via estOrientInfo.name)
      rheMac8.intronEst.qName (via estOrientInfo.name)

Sample Rows
 
binchromchromStartchromEndnameintronOrientationsizePolyArevSizePolyAsignalPosrevSignalPos
1083chr16535481065368747AB47188830000
1083chr16535481065368747AB47188940000
1411chr1108304074108304296AF15945000000
1563chr1128199717128199902AF089889000210
1787chr1157611043157611141AF08973200000
686chr111329783513297995AF07512600000
948chr114760054447600766AF08973100000
958chr124891684548917124AF13902700000
1090chr126630169566301981AF07512200000
1167chr127638546076385713AF14888500000

Note: all start coordinates in our database are 0-based, not 1-based. See explanation here.