Schema for mrnaOrientInfo
  Database: rheMac8    Primary Table: mrnaOrientInfo    Row Count: 391,457   Data last updated: 2020-08-22
Format description: Extra information on ESTs - calculated by polyInfo program
On download server: MariaDB table dump directory
fieldexampleSQL type info description
bin 585smallint(5) unsigned range Indexing field to speed chromosome range queries.
chrom chr1varchar(255) values Reference sequence chromosome or scaffold
chromStart 29575int(10) unsigned range Start position in chromosome
chromEnd 34273int(10) unsigned range End position in chromosome
name JV673967varchar(255) values Accession of EST
intronOrientation 2smallint(6) range Orientation of introns with respect to EST
sizePolyA 0smallint(6) range Number of trailing A's
revSizePolyA 0smallint(6) range Number of trailing A's on reverse strand
signalPos 0smallint(6) range Position of start of polyA signal relative to end of EST or 0 if no signal
revSignalPos 0smallint(6) range PolyA signal position on reverse strand if any

Connected Tables and Joining Fields
        hgFixed.gbCdnaInfo.acc (via mrnaOrientInfo.name)
      hgFixed.gbSeq.acc (via mrnaOrientInfo.name)
      hgFixed.imageClone.acc (via mrnaOrientInfo.name)
      hgFixed.refLink.mrnaAcc (via mrnaOrientInfo.name)
      hgFixed.refSeqStatus.mrnaAcc (via mrnaOrientInfo.name)
      hgFixed.refSeqSummary.mrnaAcc (via mrnaOrientInfo.name)
      knownGeneV39.kgXref.refseq (via mrnaOrientInfo.name)
      knownGeneV39.knownToRefSeq.value (via mrnaOrientInfo.name)
      rheMac8.all_mrna.qName (via mrnaOrientInfo.name)
      rheMac8.refFlat.name (via mrnaOrientInfo.name)
      rheMac8.refGene.name (via mrnaOrientInfo.name)
      rheMac8.refSeqAli.qName (via mrnaOrientInfo.name)

Sample Rows
 
binchromchromStartchromEndnameintronOrientationsizePolyArevSizePolyAsignalPosrevSignalPos
585chr12957534273JV67396720000
585chr12958537613JV64322240000
585chr12962037624JV05270040000
585chr12964637311JU32917330000
585chr12965334276JV53436920000
585chr12966134320JV60681520000
585chr12972637567JV57225240000
585chr13422537465JV49583720000
585chr13431137617JV60681420000
585chr13923542805JV57225160000

Note: all start coordinates in our database are 0-based, not 1-based. See explanation here.