Schema for xenoRefFlat
  Database: rn6    Primary Table: xenoRefFlat    Row Count: 223,156   Data last updated: 2020-08-20
Format description: A gene prediction with additional geneName field.
On download server: MariaDB table dump directory
fieldexampleSQL type info description
geneName CELF1varchar(255) values Name of gene as it appears in genome browser.
name NM_001376454varchar(255) values Name of gene
chrom chr3varchar(255) values Reference sequence chromosome or scaffold
strand +char(1) values + or - for strand
txStart 79823943int(10) unsigned range Transcription start position (or end position for minus strand item)
txEnd 79844548int(10) unsigned range Transcription end position (or start position for minus strand item)
cdsStart 79823957int(10) unsigned range Coding region start (or end position for minus strand item)
cdsEnd 79838441int(10) unsigned range Coding region end (or start position for minus strand item)
exonCount 40int(10) unsigned range Number of exons
exonStarts 79823943,79826136,79826592,...longblob   Exon start positions (or end positions for minus strand item)
exonEnds 79824135,79826219,79826641,...longblob   Exon end positions (or start positions for minus strand item)

Connected Tables and Joining Fields
        hgFixed.gbCdnaInfo.acc (via xenoRefFlat.name)
      hgFixed.gbSeq.acc (via xenoRefFlat.name)
      hgFixed.imageClone.acc (via xenoRefFlat.name)
      rn6.xenoMrna.qName (via xenoRefFlat.name)
      rn6.xenoRefGene.name (via xenoRefFlat.name)
      rn6.xenoRefSeqAli.qName (via xenoRefFlat.name)

Sample Rows
 
geneNamenamechromstrandtxStarttxEndcdsStartcdsEndexonCountexonStartsexonEnds
CELF1NM_001376454chr3+798239437984454879823957798384414079823943,79826136,79826592,79828163,79828776,79829762,79831732,79833635,79834596,79835662,79837782,79838313,79838721,79839014,79 ...79824135,79826219,79826641,79828298,79828856,79829924,79831796,79833725,79834710,79835848,79837926,79838690,79838777,79839026,79 ...
THEM4NM_001080368chr2+1955649191955762141955649191955757507195564919,195569127,195570181,195570235,195574151,195575711,195576148,195565098,195569294,195570211,195570239,195574285,195575783,195576214,
PSMC2NM_001006225chr4-9867214988136598672149881365129867214,9867455,9867643,9870438,9871497,9872187,9872801,9873228,9876463,9877236,9877934,9881295,9867375,9867549,9867844,9870528,9871662,9872280,9872876,9873367,9876557,9877322,9877968,9881365,
Tceal9NM_011712chrX+1067913411067946701067939011067942165106791341,106791963,106793879,106793991,106794416,106791489,106792031,106793944,106794406,106794670,
Fmnl3NM_011711chr7-14098179314103331614098336014103313631140981793,140982259,140982343,140982409,140983357,140983571,140983998,140984413,140984796,140985459,140985678,140985854,14098603 ...140982249,140982313,140982383,140982759,140983457,140983690,140984091,140984515,140984957,140985589,140985759,140985923,14098627 ...
AMN1NM_001319358chr4-1836710071836934441836710071836934446183671007,183676090,183677974,183679057,183690697,183693312,183671081,183676202,183678028,183679278,183690842,183693444,
RNF167NM_001320357chr10+572689535727262757268986572724481357268953,57269146,57270358,57270582,57270832,57271102,57271317,57272000,57272164,57272310,57272467,57272532,57272606,57269070,57269227,57270484,57270670,57270923,57271205,57271412,57272081,57272252,57272448,57272509,57272550,57272627,
RASD2NM_001376515chr19+14658566146639121465858214662105414658566,14661575,14662120,14663888,14658853,14662109,14662171,14663912,
TTC13NM_001376514chr19-574307305748445357430885574844531957430730,57432740,57432953,57433663,57434997,57436134,57438987,57439939,57441276,57442556,57443113,57445263,57448788,57449128,57 ...57431000,57432820,57433035,57433740,57435132,57436242,57439072,57440023,57441369,57442689,57443243,57445421,57448963,57449273,57 ...
TTC13NM_001376513chr19-574307305748445357430885574844532257430730,57432740,57432953,57433663,57434997,57436134,57438987,57439939,57441276,57442556,57443113,57445263,57448788,57449128,57 ...57431000,57432820,57433035,57433740,57435132,57436242,57439072,57440023,57441369,57442689,57443243,57445421,57448963,57449273,57 ...

Note: all start coordinates in our database are 0-based, not 1-based. See explanation here.