Schema for xenoRefFlat
  Database: rn7    Primary Table: xenoRefFlat    Row Count: 219,715   Data last updated: 2021-03-24
Format description: A gene prediction with additional geneName field.
On download server: MariaDB table dump directory
fieldexampleSQL type info description
geneName VN2R610varchar(255) values Name of gene as it appears in genome browser.
name NM_001099593varchar(255) values Name of gene
chrom chr1varchar(255) values Reference sequence chromosome or scaffold
strand +char(1) values + or - for strand
txStart 349991int(10) unsigned range Transcription start position (or end position for minus strand item)
txEnd 352107int(10) unsigned range Transcription end position (or start position for minus strand item)
cdsStart 349991int(10) unsigned range Coding region start (or end position for minus strand item)
cdsEnd 352107int(10) unsigned range Coding region end (or start position for minus strand item)
exonCount 3int(10) unsigned range Number of exons
exonStarts 349991,351321,351729,longblob   Exon start positions (or end positions for minus strand item)
exonEnds 350096,351678,352107,longblob   Exon end positions (or start positions for minus strand item)

Connected Tables and Joining Fields
        hgFixed.gbCdnaInfo.acc (via xenoRefFlat.name)
      hgFixed.gbSeq.acc (via xenoRefFlat.name)
      hgFixed.imageClone.acc (via xenoRefFlat.name)
      rn7.xenoMrna.qName (via xenoRefFlat.name)
      rn7.xenoRefGene.name (via xenoRefFlat.name)
      rn7.xenoRefSeqAli.qName (via xenoRefFlat.name)

Sample Rows
 
geneNamenamechromstrandtxStarttxEndcdsStartcdsEndexonCountexonStartsexonEnds
VN2R610NM_001099593chr1+3499913521073499913521073349991,351321,351729,350096,351678,352107,
VN2R597NM_001099577chr1+3513363521073513363521072351336,351729,351666,352107,
Gm26808NR_166631chr1+6287958488378488378488374628795,848561,848740,848798,628847,848611,848783,848837,
Vmn2r129NM_001384510chr1-7261249691497269969690828726124,730612,730925,731821,731966,896818,968883,969055,727024,730892,731405,731894,732021,896879,969044,969149,
Vmn2r85NM_001102602chr1+775163122276477516312227647775163,777985,1164900,1217536,1219186,1220587,1221868,775350,778142,1164966,1218338,1219413,1220708,1222764,
Vmn2r8NM_001104620chr1+775163122276477516312227649775163,775552,1164671,1164893,1217536,1218140,1219185,1220584,1221868,775352,775556,1164778,1164966,1218136,1218338,1219410,1220708,1222764,
Vmn2r84NM_001081448chr1+775163122276677516312227667775163,777985,1164900,1217536,1219186,1220587,1221866,775350,778142,1164966,1218338,1219413,1220703,1222766,
Vmn2r87NM_001103366chr1+775163122276677516312227667775163,777986,1164893,1217536,1219186,1220587,1221868,775359,778184,1164966,1218338,1219413,1220708,1222766,
Vmn2r86NM_001103365chr1+775163153437977516315343798775163,777985,1164900,1217536,1219186,1220587,1221868,1534161,775350,778141,1164966,1218338,1219413,1220708,1222554,1534379,
Gm14496NM_001205282chr1+116190512227661161905122276671161905,1216851,1217074,1217535,1219188,1220584,1221868,1162111,1217016,1217115,1218341,1219410,1220708,1222766,

Note: all start coordinates in our database are 0-based, not 1-based. See explanation here.