Schema for rnBlastTab
  Database: sacCer1    Primary Table: rnBlastTab    Row Count: 2,968   Data last updated: 2006-07-03
Format description: Blast alignments of Rat genes
On download server: MariaDB table dump directory
fieldexampleSQL type info description
query YAL003Wvarchar(255) values Name of sequence in this assembly (query)
target NM_001013104varchar(255) values Name of sequence in other assembly (target)
identity 54.76float range Percent identity
aliLength 126int(10) unsigned range Length of alignment
mismatch 56int(10) unsigned range Number of mismatches
gapOpen 1int(10) unsigned range Number of gap openings
qStart 80int(10) unsigned range Start in query (0 based)
qEnd 206int(10) unsigned range End in query (non-inclusive)
tStart 525int(10) unsigned range Start in target (0 based)
tEnd 650int(10) unsigned range End in target (non-inclusive)
eValue 1.9999999999999998e-26double range Expectation value
bitScore 114double range Bit score

Connected Tables and Joining Fields
        sacCer1.choExpDistance.query (via rnBlastTab.query)
      sacCer1.choExpDistance.target (via rnBlastTab.query)
      sacCer1.dmBlastTab.query (via rnBlastTab.query)
      sacCer1.esRegGeneToModule.gene (via rnBlastTab.query)
      sacCer1.esRegGeneToMotif.gene (via rnBlastTab.query)
      sacCer1.esRegUpstreamRegion.name (via rnBlastTab.query)
      sacCer1.hgBlastTab.query (via rnBlastTab.query)
      sacCer1.mmBlastTab.query (via rnBlastTab.query)
      sacCer1.sgdAbundance.name (via rnBlastTab.query)
      sacCer1.sgdBlastTab.query (via rnBlastTab.query)
      sacCer1.sgdBlastTab.target (via rnBlastTab.query)
      sacCer1.sgdCanonical.transcript (via rnBlastTab.query)
      sacCer1.sgdDescription.name (via rnBlastTab.query)
      sacCer1.sgdGene.name (via rnBlastTab.query)
      sacCer1.sgdIsoforms.transcript (via rnBlastTab.query)
      sacCer1.sgdLocalization.name (via rnBlastTab.query)
      sacCer1.sgdPep.name (via rnBlastTab.query)
      sacCer1.sgdToName.name (via rnBlastTab.query)
      sacCer1.sgdToPfam.name (via rnBlastTab.query)
      sacCer1.sgdToSwissProt.name (via rnBlastTab.query)

Sample Rows
 
querytargetidentityaliLengthmismatchgapOpenqStartqEndtStarttEndeValuebitScore
YAL003WNM_00101310454.76126561802065256501.9999999999999998e-26114
YAL005CNM_02435176.86121373060706120860
YAL007CNM_00100424936.367748135112361120.000000000161.2
YAL012WNM_01707449.8738718468392163969.999999999999999e-98351
YAL014CNM_03165639.06643621602221392020.0000942.4
YAL016WNM_05714044.0559731183262665833e-132467
YAL017WNM_00100936240.31258146410971354106313141e-51200
YAL019WNM_00100444633.6857929616570112472912456e-72268
YAL020CNM_00101207430.711478131161572710.00000447.4
YAL021CNM_00101399826.535121884858222776023e-29125

Note: all start coordinates in our database are 0-based, not 1-based. See explanation here.