Schema for mrnaOrientInfo
  Database: sorAra1    Primary Table: mrnaOrientInfo    Row Count: 8   Data last updated: 2016-04-18
Format description: Extra information on ESTs - calculated by polyInfo program
On download server: MariaDB table dump directory
fieldexampleSQL type info description
bin 585smallint(5) unsigned range Indexing field to speed chromosome range queries.
chrom scaffold_139494varchar(255) values Reference sequence chromosome or scaffold
chromStart 0int(10) unsigned range Start position in chromosome
chromEnd 3858int(10) unsigned range End position in chromosome
name AB047248varchar(255) values Accession of EST
intronOrientation 4smallint(6) range Orientation of introns with respect to EST
sizePolyA 70smallint(6) range Number of trailing A's
revSizePolyA 0smallint(6) range Number of trailing A's on reverse strand
signalPos 90smallint(6) range Position of start of polyA signal relative to end of EST or 0 if no signal
revSignalPos 0smallint(6) range PolyA signal position on reverse strand if any

Connected Tables and Joining Fields
        hgFixed.gbCdnaInfo.acc (via mrnaOrientInfo.name)
      hgFixed.gbSeq.acc (via mrnaOrientInfo.name)
      hgFixed.imageClone.acc (via mrnaOrientInfo.name)
      hgFixed.refLink.mrnaAcc (via mrnaOrientInfo.name)
      hgFixed.refSeqStatus.mrnaAcc (via mrnaOrientInfo.name)
      hgFixed.refSeqSummary.mrnaAcc (via mrnaOrientInfo.name)
      knownGeneV39.kgXref.refseq (via mrnaOrientInfo.name)
      knownGeneV39.knownToRefSeq.value (via mrnaOrientInfo.name)
      sorAra1.all_mrna.qName (via mrnaOrientInfo.name)

Sample Rows
 
binchromchromStartchromEndnameintronOrientationsizePolyArevSizePolyAsignalPosrevSignalPos
585scaffold_13949403858AB0472484700900
585scaffold_13983937955552AB0472480700900
585scaffold_2319782059120693AY13447100000
585scaffold_238411904436AB0472441440680
586scaffold_256709168119175012AJ2231493240470
585scaffold_257970203323AY13447100000
585scaffold_81616346572KC52474302000
585scaffold_99079467759AB0472480690900

Note: all start coordinates in our database are 0-based, not 1-based. See explanation here.