Schema for xenoRefFlat
  Database: sorAra2    Primary Table: xenoRefFlat    Row Count: 469,604   Data last updated: 2020-08-20
Format description: A gene prediction with additional geneName field.
On download server: MariaDB table dump directory
fieldexampleSQL type info description
geneName ZNF37Avarchar(255) values Name of gene as it appears in genome browser.
name NM_001324256varchar(255) values Name of gene
chrom JH798225varchar(255) values Reference sequence chromosome or scaffold
strand +char(1) values + or - for strand
txStart 355435int(10) unsigned range Transcription start position (or end position for minus strand item)
txEnd 386325int(10) unsigned range Transcription end position (or start position for minus strand item)
cdsStart 355435int(10) unsigned range Coding region start (or end position for minus strand item)
cdsEnd 355567int(10) unsigned range Coding region end (or start position for minus strand item)
exonCount 2int(10) unsigned range Number of exons
exonStarts 355435,386295,longblob   Exon start positions (or end positions for minus strand item)
exonEnds 355567,386325,longblob   Exon end positions (or start positions for minus strand item)

Connected Tables and Joining Fields
        hgFixed.gbCdnaInfo.acc (via xenoRefFlat.name)
      hgFixed.gbSeq.acc (via xenoRefFlat.name)
      hgFixed.imageClone.acc (via xenoRefFlat.name)
      sorAra2.xenoRefGene.name (via xenoRefFlat.name)
      sorAra2.xenoRefSeqAli.qName (via xenoRefFlat.name)

Sample Rows
 
geneNamenamechromstrandtxStarttxEndcdsStartcdsEndexonCountexonStartsexonEnds
ZNF37ANM_001324256JH798225+3554353863253554353555672355435,386295,355567,386325,
CHST9NM_001256316JH798364-1254781820821820821820825125478,125680,127404,181763,182045,125502,125692,127417,181777,182082,
CHST9NM_001256316JH798164-114544741172331411637079117232972411454474,11463431,11463496,11464248,11464708,11465964,11468557,11468639,11468799,11468932,11469927,11470066,11470140,11470764,11 ...11454514,11463451,11463998,11464279,11464810,11465988,11468595,11468717,11468871,11468956,11470050,11470096,11470176,11470809,11 ...
plpp1NM_001011077JH798178-730043073273297300430732732957300430,7300987,7307190,7318524,7327173,7300457,7301164,7307248,7318805,7327329,
MAZNR_074080JH798210+372193539692703969270396927073721935,3723356,3965493,3965730,3965775,3967621,3969255,3721948,3723375,3965511,3965741,3965790,3967628,3969270,
NR2F2NM_001145155JH798254+2415444243039024156332427751222415444,2424141,2427487,2427776,2428423,2428446,2428995,2429041,2429086,2429355,2429435,2429459,2429517,2429610,2429645,2429698, ...2415676,2424669,2427751,2428412,2428435,2428986,2429011,2429076,2429339,2429373,2429448,2429473,2429561,2429625,2429681,2429751, ...
CKI1NM_117511JH798201-340695734079083406957340790823406957,3407500,3407407,3407908,
top3bNM_001126919JH798172+149163071493188114916307149318811814916307,14917375,14918564,14920154,14921198,14921918,14923065,14924508,14925315,14925574,14926499,14926724,14928172,14928629,14 ...14916377,14917504,14918674,14920229,14921353,14922081,14923153,14924601,14925470,14925682,14926638,14926898,14928299,14928778,14 ...
BTBD11NM_001205745JH798174-158446181604661415844618160466141715844618,15845432,15847767,15850590,15852153,15853472,15856023,15856598,15857990,15861975,15887817,15887943,15900030,16045759,16 ...15844681,15845465,15847872,15850696,15852243,15853523,15856101,15856682,15857997,15862121,15887874,15887978,15900097,16045852,16 ...
calr3bNM_201465JH798159-15463826156437441564368315643744315463826,15643683,15643701,15463848,15643701,15643744,

Note: all start coordinates in our database are 0-based, not 1-based. See explanation here.