Schema for estOrientInfo
  Database: susScr2    Primary Table: estOrientInfo    Row Count: 1,513,358   Data last updated: 2016-07-11
Format description: Extra information on ESTs - calculated by polyInfo program
On download server: MariaDB table dump directory
fieldexampleSQL type description
bin 1244smallint(5) unsigned Indexing field to speed chromosome range queries.
chrom chr1varchar(255) Reference sequence chromosome or scaffold
chromStart 86461623int(10) unsigned Start position in chromosome
chromEnd 86461984int(10) unsigned End position in chromosome
name AA056886varchar(255) Accession of EST
intronOrientation 0smallint(6) Orientation of introns with respect to EST
sizePolyA 0smallint(6) Number of trailing A's
revSizePolyA 0smallint(6) Number of trailing A's on reverse strand
signalPos 0smallint(6) Position of start of polyA signal relative to end of EST or 0 if no signal
revSignalPos 0smallint(6) PolyA signal position on reverse strand if any

Connected Tables and Joining Fields
        hgFixed.gbCdnaInfo.acc (via estOrientInfo.name)
      hgFixed.gbSeq.acc (via estOrientInfo.name)
      hgFixed.imageClone.acc (via estOrientInfo.name)
      susScr2.all_est.qName (via estOrientInfo.name)
      susScr2.est.qName (via estOrientInfo.name)
      susScr2.intronEst.qName (via estOrientInfo.name)

Sample Rows
 
binchromchromStartchromEndnameintronOrientationsizePolyArevSizePolyAsignalPosrevSignalPos
1244chr18646162386461984AA05688600000
1375chr1103663268103667393AA05691330000
1376chr1103713692103714109AA056914000013
2631chr1268207802268208062AA056891000180
2631chr1268253672268253932AA056891000180
714chr101696123416961426AA063650000016
727chr111867226718672770AA05692000000
727chr111867231818672725AA05692100000
891chr124018998840190428AA063653-10000
984chr125231463052314930AA06366800000

Note: all start coordinates in our database are 0-based, not 1-based. See explanation here.