Schema for xenoRefFlat
  Database: taeGut1    Primary Table: xenoRefFlat    Row Count: 232,365   Data last updated: 2020-09-01
Format description: A gene prediction with additional geneName field.
On download server: MariaDB table dump directory
fieldexampleSQL type info description
geneName LOC692830varchar(255) values Name of gene as it appears in genome browser.
name NM_001046675varchar(255) values Name of gene
chrom chr4Avarchar(255) values Reference sequence chromosome or scaffold
strand +char(1) values + or - for strand
txStart 15923853int(10) unsigned range Transcription start position (or end position for minus strand item)
txEnd 15924249int(10) unsigned range Transcription end position (or start position for minus strand item)
cdsStart 15923853int(10) unsigned range Coding region start (or end position for minus strand item)
cdsEnd 15924249int(10) unsigned range Coding region end (or start position for minus strand item)
exonCount 2int(10) unsigned range Number of exons
exonStarts 15923853,15924108,longblob   Exon start positions (or end positions for minus strand item)
exonEnds 15923973,15924249,longblob   Exon end positions (or start positions for minus strand item)

Connected Tables and Joining Fields
        hgFixed.gbCdnaInfo.acc (via xenoRefFlat.name)
      hgFixed.gbSeq.acc (via xenoRefFlat.name)
      hgFixed.imageClone.acc (via xenoRefFlat.name)
      taeGut1.xenoMrna.qName (via xenoRefFlat.name)
      taeGut1.xenoRefGene.name (via xenoRefFlat.name)
      taeGut1.xenoRefSeqAli.qName (via xenoRefFlat.name)

Sample Rows
 
geneNamenamechromstrandtxStarttxEndcdsStartcdsEndexonCountexonStartsexonEnds
LOC692830NM_001046675chr4A+15923853159242491592385315924249215923853,15924108,15923973,15924249,
CLDN14NM_001193733chr1-7967207973437967227973434796720,796845,797045,797147,796750,796995,797096,797343,
UBP1NM_001128161chr7+6187794621347061877946213470136187794,6187863,6200637,6202159,6202337,6202512,6203220,6204352,6208692,6210532,6211882,6212957,6213432,6187827,6187945,6200681,6202260,6202342,6202619,6203373,6204400,6208791,6210586,6211887,6213010,6213470,
ELAVL3NM_032281chr8+21056466210959102105646621095910721056466,21079316,21089319,21089803,21091419,21095582,21095646,21056599,21079420,21089470,21090026,21091464,21095625,21095910,
PRDM8NM_001103232chr6+17009583170129081700958317012904317009583,17012665,17012812,17009745,17012791,17012908,
Tns1NM_001191810chr7-997427710013010997427710013010339974277,9975830,9976172,9976421,9976595,9977314,9977335,9977844,9978605,9980137,9980365,9980530,9980622,9986079,9988549,9988823, ...9974421,9975923,9976342,9976455,9976667,9977317,9977430,9977976,9978687,9980305,9980485,9980559,9980722,9986169,9988615,9988961, ...
LipnNM_001191955chr6-18427746184352881842774618435288418427746,18431672,18431994,18435192,18427794,18431707,18432113,18435288,
ap1m2NM_001165294chr28-3213619322026832136193220268133213619,3213881,3214622,3215026,3215050,3215811,3215897,3216588,3216608,3217162,3217452,3218646,3220238,3213696,3214007,3214778,3215029,3215118,3215896,3215954,3216591,3216734,3217313,3217562,3218706,3220268,
TOGARAM1NM_001308120chr5-61617175616394356161717561639435861617175,61619623,61619989,61625037,61625309,61627588,61635866,61639354,61617289,61619686,61620205,61625139,61625411,61627822,61636001,61639435,
MAPK12NM_001025224chr26-395778839624153957788396241573957788,3958186,3959213,3960727,3960821,3961906,3962282,3957833,3958300,3959261,3960778,3960835,3961929,3962415,

Note: all start coordinates in our database are 0-based, not 1-based. See explanation here.