Schema for all_mrna
  Database: taeGut2    Primary Table: all_mrna    Row Count: 5,140   Data last updated: 2018-10-02
Format description: Summary info about a patSpace alignment
On download server: MariaDB table dump directory
fieldexampleSQL type info description
bin 601smallint(5) unsigned range Indexing field to speed chromosome range queries.
matches 1079int(10) unsigned range Number of bases that match that aren't repeats
misMatches 10int(10) unsigned range Number of bases that don't match
repMatches 0int(10) unsigned range Number of bases that match but are part of repeats
nCount 0int(10) unsigned range Number of 'N' bases
qNumInsert 2int(10) unsigned range Number of inserts in query
qBaseInsert 16int(10) unsigned range Number of bases inserted in query
tNumInsert 5int(10) unsigned range Number of inserts in target
tBaseInsert 3039int(10) unsigned range Number of bases inserted in target
strand -char(2) values + or - for strand. First character query, second target (optional)
qName DQ214360varchar(255) values Query sequence name
qSize 1364int(10) unsigned range Query sequence size
qStart 242int(10) unsigned range Alignment start position in query
qEnd 1347int(10) unsigned range Alignment end position in query
tName chr1varchar(255) values Target sequence name
tSize 118548696int(10) unsigned range Target sequence size
tStart 2132707int(10) unsigned range Alignment start position in target
tEnd 2136835int(10) unsigned range Alignment end position in target
blockCount 7int(10) unsigned range Number of blocks in alignment
blockSizes 105,566,211,75,49,51,32,longblob   Size of each block
qStarts 17,122,696,907,990,1039,1090,longblob   Start of each block in query.
tStarts 2132707,2132817,2133383,213...longblob   Start of each block in target.

Connected Tables and Joining Fields
        hgFixed.gbCdnaInfo.acc (via all_mrna.qName)
      hgFixed.gbMiscDiff.acc (via all_mrna.qName)
      hgFixed.gbSeq.acc (via all_mrna.qName)
      hgFixed.gbWarn.acc (via all_mrna.qName)
      hgFixed.imageClone.acc (via all_mrna.qName)
      taeGut2.all_est.qName (via all_mrna.qName)
      taeGut2.mrnaOrientInfo.name (via all_mrna.qName)
      taeGut2.refGene.name (via all_mrna.qName)
      taeGut2.refSeqAli.qName (via all_mrna.qName)
      taeGut2.xenoRefGene.name (via all_mrna.qName)
      taeGut2.xenoRefSeqAli.qName (via all_mrna.qName)

Sample Rows
 
binmatchesmisMatchesrepMatchesnCountqNumInsertqBaseInserttNumInserttBaseInsertstrandqNameqSizeqStartqEndtNametSizetStarttEndblockCountblockSizesqStartstStarts
6011079100021653039-DQ21436013642421347chr1118548696213270721368357105,566,211,75,49,51,32,17,122,696,907,990,1039,1090,2132707,2132817,2133383,2134850,2134933,2136669,2136803,
60110909001843028-DQ21436112751511258chr1118548696213270821368356109,564,211,132,51,32,17,126,698,909,1041,1092,2132708,2132819,2133383,2134850,2136669,2136803,
75908160014257687+DQ2169989491929chr111854869623229662381577470,52,609,193,1,71,123,736,2322966,2340930,2380775,2381384,
7545920000257687+DQ2170054751462chr111854869623229802381128356,52,353,1,57,109,2322980,2340930,2380775,
7545830000257687+DQ2170074761462chr111854869623229802381128356,52,353,1,57,109,2322980,2340930,2380775,
7571220000257687+DQ2170117321715chr111854869623229802381381356,52,606,1,57,109,2322980,2340930,2380775,
7576350011357688+DQ2169897701770chr111854869623229802381436556,52,569,37,54,1,57,109,679,716,2322980,2340930,2380775,2381344,2381382,
75794170029357694+DQ2170088361821chr111854869623229802381485556,52,469,130,104,1,57,109,585,717,2322980,2340930,2380775,2381251,2381381,
75906600321257687+DQ2169809481934chr111854869623229802381579656,11,41,610,179,15,1,57,69,110,739,919,2322980,2340930,2340941,2380775,2381385,2381564,
758951700221257687+DQ2169819481934chr111854869623229802381579556,52,125,474,205,1,57,109,236,729,2322980,2340930,2380775,2380900,2381374,

Note: all start coordinates in our database are 0-based, not 1-based. See explanation here.