Schema for xenoRefFlat
  Database: taeGut2    Primary Table: xenoRefFlat    Row Count: 258,443   Data last updated: 2020-08-20
Format description: A gene prediction with additional geneName field.
On download server: MariaDB table dump directory
fieldexampleSQL type info description
geneName Crtac1varchar(255) values Name of gene as it appears in genome browser.
name NM_134401varchar(255) values Name of gene
chrom chr6varchar(255) values Reference sequence chromosome or scaffold
strand +char(1) values + or - for strand
txStart 21447654int(10) unsigned range Transcription start position (or end position for minus strand item)
txEnd 21454129int(10) unsigned range Transcription end position (or start position for minus strand item)
cdsStart 21447654int(10) unsigned range Coding region start (or end position for minus strand item)
cdsEnd 21454129int(10) unsigned range Coding region end (or start position for minus strand item)
exonCount 14int(10) unsigned range Number of exons
exonStarts 21447654,21449017,21450142,...longblob   Exon start positions (or end positions for minus strand item)
exonEnds 21447839,21449216,21450208,...longblob   Exon end positions (or start positions for minus strand item)

Connected Tables and Joining Fields
        hgFixed.gbCdnaInfo.acc (via xenoRefFlat.name)
      hgFixed.gbSeq.acc (via xenoRefFlat.name)
      hgFixed.imageClone.acc (via xenoRefFlat.name)
      taeGut2.xenoRefGene.name (via xenoRefFlat.name)
      taeGut2.xenoRefSeqAli.qName (via xenoRefFlat.name)

Sample Rows
 
geneNamenamechromstrandtxStarttxEndcdsStartcdsEndexonCountexonStartsexonEnds
Crtac1NM_134401chr6+214476542145412921447654214541291421447654,21449017,21450142,21450211,21450361,21450868,21451049,21451619,21452048,21452085,21452530,21453291,21453884,21454051,21447839,21449216,21450208,21450268,21450364,21451025,21451052,21451744,21452084,21452154,21452664,21453382,21453968,21454129,
Zkscan6NM_001302375chrLGE22_EQ833380_random+31999359253199935925231999,35677,32156,35925,
Zkscan6NM_001302375chrUn_EQ836970+627266476272664716272,6647,
Zkscan6NM_001302375chrUn_EQ837376-4864415320048644153200248644,152908,48757,153200,
MEF1NM_001181956chr9-25789202257952292578920225795229725789202,25789785,25790332,25792393,25794086,25794741,25795133,25789319,25789863,25790458,25792534,25794293,25794831,25795229,
His4:CG33869NM_001032211chr1A+47504613475049254750461347504925147504613,47504925,
esrp2NM_199272chr2+1325971881326148991325971881326148998132597188,132607188,132609070,132609266,132609493,132610940,132612647,132614698,132597245,132607236,132609180,132609399,132609536,132611245,132612770,132614899,
Olr268NM_001000733chrUn_EQ840322-12058122741205812274212058,12220,12151,12274,
zgc:194282NM_001136250chr3-1110050021110198051110050021110198053111005002,111006905,111019742,111005131,111007034,111019805,
BCL11BNM_001297633chr5-48961577490547534896157749054753748961577,48962534,48962648,48962675,49010344,49039240,49054696,48962276,48962606,48962672,48963591,49010392,49039523,49054753,

Note: all start coordinates in our database are 0-based, not 1-based. See explanation here.