Schema for xenoRefFlat
  Database: tarSyr1    Primary Table: xenoRefFlat    Row Count: 888,233   Data last updated: 2020-09-01
Format description: A gene prediction with additional geneName field.
On download server: MariaDB table dump directory
fieldexampleSQL type description
geneName pola1.Svarchar(255) Name of gene as it appears in genome browser.
name NM_001088586varchar(255) Name of gene
chrom scaffold_35963varchar(255) Reference sequence chromosome or scaffold
strand +char(1) + or - for strand
txStart 4630int(10) unsigned Transcription start position (or end position for minus strand item)
txEnd 13783int(10) unsigned Transcription end position (or start position for minus strand item)
cdsStart 4630int(10) unsigned Coding region start (or end position for minus strand item)
cdsEnd 13783int(10) unsigned Coding region end (or start position for minus strand item)
exonCount 7int(10) unsigned Number of exons
exonStarts 4630,5501,5677,7099,8186,90...longblob Exon start positions (or end positions for minus strand item)
exonEnds 4741,5609,5679,7172,8315,91...longblob Exon end positions (or start positions for minus strand item)

Connected Tables and Joining Fields
        hgFixed.gbCdnaInfo.acc (via xenoRefFlat.name)
      hgFixed.gbSeq.acc (via xenoRefFlat.name)
      hgFixed.imageClone.acc (via xenoRefFlat.name)
      tarSyr1.xenoRefGene.name (via xenoRefFlat.name)
      tarSyr1.xenoRefSeqAli.qName (via xenoRefFlat.name)

Sample Rows
 
geneNamenamechromstrandtxStarttxEndcdsStartcdsEndexonCountexonStartsexonEnds
pola1.SNM_001088586scaffold_35963+46301378346301378374630,5501,5677,7099,8186,9015,13699,4741,5609,5679,7172,8315,9159,13783,
CG3632NM_001103526scaffold_211+60736645476073664547360736,61656,64442,60835,61827,64547,
zgc:56095NM_001141424scaffold_65839-927597699275976939275,9350,9520,9308,9470,9769,
P2RY4NM_001244168scaffold_132085-267230382672303812672,3038,
IRAK2NM_001030605scaffold_201804-467648834676488314676,4883,
ZNF577NM_001370447scaffold_165370-14339093277390915143,2331,2751,2896,2939,2974,3033,3173,3277,3490,3499,3544,3552,3625,3819,221,2412,2835,2922,2954,3014,3057,3214,3358,3497,3516,3552,3608,3816,3909,
DHFRNM_001077883scaffold_27285+21841897121931897152184,2607,5788,16075,18847,2279,2657,5889,16205,18971,
DHFRNM_001077883scaffold_88728+355936563559363713559,3656,
Zscan10NM_001106981scaffold_167259+276129522761295212761,2952,
Zscan10NM_001106981scaffold_191137+7148398398391714,839,

Note: all start coordinates in our database are 0-based, not 1-based. See explanation here.