Schema for xenoRefFlat
  Database: tarSyr2    Primary Table: xenoRefFlat    Row Count: 375,108   Data last updated: 2020-08-20
Format description: A gene prediction with additional geneName field.
On download server: MariaDB table dump directory
fieldexampleSQL type info description
geneName LOC102093126varchar(255) values Name of gene as it appears in genome browser.
name NM_001282820varchar(255) values Name of gene
chrom KE942672v1varchar(255) values Reference sequence chromosome or scaffold
strand -char(1) values + or - for strand
txStart 931648int(10) unsigned range Transcription start position (or end position for minus strand item)
txEnd 944027int(10) unsigned range Transcription end position (or start position for minus strand item)
cdsStart 931648int(10) unsigned range Coding region start (or end position for minus strand item)
cdsEnd 944027int(10) unsigned range Coding region end (or start position for minus strand item)
exonCount 12int(10) unsigned range Number of exons
exonStarts 931648,932588,934471,935679...longblob   Exon start positions (or end positions for minus strand item)
exonEnds 931687,932710,934529,935682...longblob   Exon end positions (or start positions for minus strand item)

Connected Tables and Joining Fields
        hgFixed.gbCdnaInfo.acc (via xenoRefFlat.name)
      hgFixed.gbSeq.acc (via xenoRefFlat.name)
      hgFixed.imageClone.acc (via xenoRefFlat.name)
      tarSyr2.xenoRefGene.name (via xenoRefFlat.name)
      tarSyr2.xenoRefSeqAli.qName (via xenoRefFlat.name)

Sample Rows
 
geneNamenamechromstrandtxStarttxEndcdsStartcdsEndexonCountexonStartsexonEnds
LOC102093126NM_001282820KE942672v1-93164894402793164894402712931648,932588,934471,935679,935750,936721,939123,941673,942178,943118,943130,943964,931687,932710,934529,935682,935842,936815,939138,941757,942289,943121,943226,944027,
SEPTIN8NM_001300798KE926251v1+3709954058703709954058708370995,379153,388285,392477,393266,396539,397819,405737,371100,379353,388466,392635,393273,396633,397988,405870,
ZNF28NM_006969KE938409v1+17592833284417592823728715175928,195382,195760,196414,196519,196656,209822,210162,210441,237118,237486,306557,306737,306995,332751,176060,195508,196399,196435,196572,196848,209995,210357,210520,237318,237734,306571,306980,307169,332844,
ZNF28NM_006969KE941494v1-2753543370303359173370308275354,301370,301487,301811,302219,335815,336342,336556,275384,301478,301559,302012,302285,336174,336538,337030,
HSPA2NM_001323198KE926745v1+33542354503354235450133542,35450,
LOC100499850NM_001249960KE944812v1+3358573359833358573359831335857,335983,
ZNF304NM_001329456KE950184v1-12523813348412703112872918125238,125412,125493,125675,125851,125916,126099,126437,126684,126988,128389,128586,129112,129552,129746,131029,133260,133456,125399,125458,125547,125842,125906,126074,126127,126507,126970,128389,128585,128825,129191,129719,129784,131159,133365,133484,
Fam91a1NM_001127578KE929086v1+197348591973445771973,2117,3055,3453,3719,4649,4678,2114,3055,3453,3718,4501,4663,4859,
LOC100191846NM_001137270KE928835v1+1158911213391158911213393115891,120417,121198,116020,120615,121339,
Celf4NM_001362278KE928496v1-502647643650264764361150264,51621,51853,52156,52178,52505,52998,53485,62068,72325,76283,50399,51767,51932,52159,52251,52565,53133,53614,62116,72408,76436,

Note: all start coordinates in our database are 0-based, not 1-based. See explanation here.