Schema for estOrientInfo
  Database: vicPac2    Primary Table: estOrientInfo    Row Count: 1,331   Data last updated: 2013-06-18
Format description: Extra information on ESTs - calculated by polyInfo program
On download server: MariaDB table dump directory
fieldexampleSQL type info description
bin 589smallint(5) unsigned range Indexing field to speed chromosome range queries.
chrom KB632436varchar(255) values Reference sequence chromosome or scaffold
chromStart 587823int(10) unsigned range Start position in chromosome
chromEnd 587891int(10) unsigned range End position in chromosome
name EH218980varchar(255) values Accession of EST
intronOrientation 0smallint(6) range Orientation of introns with respect to EST
sizePolyA 30smallint(6) range Number of trailing A's
revSizePolyA 0smallint(6) range Number of trailing A's on reverse strand
signalPos 0smallint(6) range Position of start of polyA signal relative to end of EST or 0 if no signal
revSignalPos 0smallint(6) range PolyA signal position on reverse strand if any

Connected Tables and Joining Fields
        hgFixed.gbCdnaInfo.acc (via estOrientInfo.name)
      hgFixed.gbSeq.acc (via estOrientInfo.name)
      hgFixed.imageClone.acc (via estOrientInfo.name)
      vicPac2.all_est.qName (via estOrientInfo.name)
      vicPac2.intronEst.qName (via estOrientInfo.name)

Sample Rows
 
binchromchromStartchromEndnameintronOrientationsizePolyArevSizePolyAsignalPosrevSignalPos
589KB632436587823587891EH218980030000
737KB6324402003388520034001EH2189950330570
674KB6324611177395911774105EH2190020300520
641KB63250074272557427467EH2189830290490
605KB63250826595042660029EH219000029000
600KB63254620791142079306EH2189980270470
595KB63256313219581322802EH219024030000
604KB63258025486542548713EH2190220300520
589KB632635557950559789EH2189993232350
587KB632766388652388761EH21901001000

Note: all start coordinates in our database are 0-based, not 1-based. See explanation here.