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Database: xenTro1 Primary Table: all_est Row Count: 1,468,934 Data last updated: 2016-04-24
Format description: Summary info about a patSpace alignment
On download server: MariaDB table dump directory
| field | example | SQL type | description |
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| bin | 585 | smallint(5) unsigned | Indexing field to speed chromosome range queries. |
| matches | 276 | int(10) unsigned | Number of bases that match that aren't repeats |
| misMatches | 1 | int(10) unsigned | Number of bases that don't match |
| repMatches | 27 | int(10) unsigned | Number of bases that match but are part of repeats |
| nCount | 0 | int(10) unsigned | Number of 'N' bases |
| qNumInsert | 0 | int(10) unsigned | Number of inserts in query |
| qBaseInsert | 0 | int(10) unsigned | Number of bases inserted in query |
| tNumInsert | 0 | int(10) unsigned | Number of inserts in target |
| tBaseInsert | 0 | int(10) unsigned | Number of bases inserted in target |
| strand | + | char(2) | + or - for strand. First character query, second target (optional) |
| qName | AL797299 | varchar(255) | Query sequence name |
| qSize | 333 | int(10) unsigned | Query sequence size |
| qStart | 29 | int(10) unsigned | Alignment start position in query |
| qEnd | 333 | int(10) unsigned | Alignment end position in query |
| tName | scaffold_1 | varchar(255) | Target sequence name |
| tSize | 7608560 | int(10) unsigned | Target sequence size |
| tStart | 3610 | int(10) unsigned | Alignment start position in target |
| tEnd | 3914 | int(10) unsigned | Alignment end position in target |
| blockCount | 1 | int(10) unsigned | Number of blocks in alignment |
| blockSizes | 304, | longblob | Size of each block |
| qStarts | 29, | longblob | Start of each block in query. |
| tStarts | 3610, | longblob | Start of each block in target. |
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Connected Tables and Joining Fields
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Sample Rows
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| bin | matches | misMatches | repMatches | nCount | qNumInsert | qBaseInsert | tNumInsert | tBaseInsert | strand | qName | qSize | qStart | qEnd | tName | tSize | tStart | tEnd | blockCount | blockSizes | qStarts | tStarts |
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| 585 | 276 | 1 | 27 | 0 | 0 | 0 | 0 | 0 | + | AL797299 | 333 | 29 | 333 | scaffold_1 | 7608560 | 3610 | 3914 | 1 | 304, | 29, | 3610, |
| 585 | 621 | 0 | 27 | 0 | 0 | 0 | 0 | 0 | + | AL854454 | 660 | 12 | 660 | scaffold_1 | 7608560 | 3610 | 4258 | 1 | 648, | 12, | 3610, |
| 585 | 533 | 0 | 14 | 0 | 1 | 7 | 1 | 4 | - | AL792208 | 554 | 0 | 554 | scaffold_1 | 7608560 | 3623 | 4174 | 2 | 540,7, | 0,547, | 3623,4167, |
| 585 | 566 | 2 | 12 | 0 | 0 | 0 | 0 | 0 | - | AL883599 | 583 | 0 | 580 | scaffold_1 | 7608560 | 3625 | 4205 | 1 | 580, | 3, | 3625, |
| 585 | 619 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | - | AL679282 | 619 | 0 | 619 | scaffold_1 | 7608560 | 3648 | 4267 | 1 | 619, | 0, | 3648, |
| 585 | 655 | 0 | 0 | 0 | 1 | 1 | 0 | 0 | - | AL642589 | 656 | 0 | 656 | scaffold_1 | 7608560 | 3662 | 4317 | 2 | 99,556, | 0,100, | 3662,3761, |
| 585 | 567 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | - | AL679104 | 567 | 0 | 567 | scaffold_1 | 7608560 | 3700 | 4267 | 1 | 567, | 0, | 3700, |
| 585 | 610 | 0 | 0 | 0 | 1 | 1 | 0 | 0 | - | AL892885 | 624 | 13 | 624 | scaffold_1 | 7608560 | 3749 | 4359 | 2 | 582,28, | 0,583, | 3749,4331, |
| 585 | 593 | 0 | 0 | 0 | 1 | 1 | 0 | 0 | - | AL873052 | 594 | 0 | 594 | scaffold_1 | 7608560 | 3782 | 4375 | 2 | 549,44, | 0,550, | 3782,4331, |
| 585 | 612 | 2 | 0 | 1 | 1 | 1 | 0 | 0 | - | AL866116 | 616 | 0 | 616 | scaffold_1 | 7608560 | 3974 | 4589 | 2 | 357,258, | 0,358, | 3974,4331, |
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Note: all start coordinates in our database are 0-based, not
1-based. See explanation
here.
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US Server