Schema for mgcFullMrna
  Database: xenTro1    Primary Table: mgcFullMrna    Row Count: 10,465   Data last updated: 2020-01-27
Format description: Summary info about a patSpace alignment
On download server: MariaDB table dump directory
fieldexampleSQL type info description
bin 585smallint(5) unsigned range Indexing field to speed chromosome range queries.
matches 3490int(10) unsigned range Number of bases that match that aren't repeats
misMatches 0int(10) unsigned range Number of bases that don't match
repMatches 141int(10) unsigned range Number of bases that match but are part of repeats
nCount 0int(10) unsigned range Number of 'N' bases
qNumInsert 0int(10) unsigned range Number of inserts in query
qBaseInsert 0int(10) unsigned range Number of bases inserted in query
tNumInsert 0int(10) unsigned range Number of inserts in target
tBaseInsert 0int(10) unsigned range Number of bases inserted in target
strand -char(2) values + or - for strand. First character query, second target (optional)
qName BC121835varchar(255) values Query sequence name
qSize 3644int(10) unsigned range Query sequence size
qStart 0int(10) unsigned range Alignment start position in query
qEnd 3631int(10) unsigned range Alignment end position in query
tName scaffold_1varchar(255) values Target sequence name
tSize 7608560int(10) unsigned range Target sequence size
tStart 19865int(10) unsigned range Alignment start position in target
tEnd 23496int(10) unsigned range Alignment end position in target
blockCount 1int(10) unsigned range Number of blocks in alignment
blockSizes 3631,longblob   Size of each block
qStarts 13,longblob   Start of each block in query.
tStarts 19865,longblob   Start of each block in target.

Connected Tables and Joining Fields
        hgFixed.gbCdnaInfo.acc (via mgcFullMrna.qName)
      hgFixed.gbSeq.acc (via mgcFullMrna.qName)
      hgFixed.imageClone.acc (via mgcFullMrna.qName)
      xenTro1.all_mrna.qName (via mgcFullMrna.qName)
      xenTro1.mgcGenes.name (via mgcFullMrna.qName)
      xenTro1.mrnaOrientInfo.name (via mgcFullMrna.qName)

Sample Rows
 
binmatchesmisMatchesrepMatchesnCountqNumInsertqBaseInserttNumInserttBaseInsertstrandqNameqSizeqStartqEndtNametSizetStarttEndblockCountblockSizesqStartstStarts
5853490014100000-BC121835364403631scaffold_17608560198652349613631,13,19865,
5851987000001418479+BC088034201301987scaffold_17608560272514771715211,182,74,130,124,143,173,91,52,109,108,111,78,186,215,0,211,393,467,597,721,864,1037,1128,1180,1289,1397,1508,1586,1772,27251,29575,30212,30422,33320,34819,37414,39878,40958,41642,42530,42943,44498,45934,47502,
734902223500025197469-BC122962499004977scaffold_176085606527026771626626,58,93,216,117,1654,166,115,123,201,125,100,70,116,130,76,5,137,75,64,57,90,79,118,203,163,13,639,697,790,1006,1123,2777,2943,3058,3181,3382,3507,3607,3677,3793,3923,3999,4004,4141,4216,4280,4337,4427,4506,4624,4827,65270,72531,81825,87721,90385,99142,101356,102738,103857,104897,113607,115536,116279,119005,124973,134213,134871,135708,140701,1 ...
5882215300001312449+BC161457225402218scaffold_1760856045851247317914223,83,151,108,142,148,82,133,140,130,115,95,112,556,0,223,306,457,565,707,855,937,1070,1210,1340,1455,1550,1662,458512,461443,463684,464648,464948,465599,465959,466983,467328,467749,469918,470113,472157,472623,
589773000001204+BC1572368080773scaffold_17608560550989551966215,758,0,15,550989,551208,
5897440000000+BC1710227484748scaffold_176085605512065519501744,4,551206,
5897440000000+BC1710247484748scaffold_176085605512065519501744,4,551206,
590682742201147+BC13598770601146968scaffold_176085606807826876426364,1249,1719,1027,58,2436,114,478,1727,3447,4474,4532,680782,681148,682400,684119,685147,685206,
59011111000043432-BC121532112901112scaffold_17608560691393695937532,611,214,102,153,17,49,660,874,976,691393,691426,694071,694940,695784,
59011480000043451-BC167898122101148scaffold_176085606913936959925644,214,102,9,179,73,717,931,1033,1042,691393,694071,694940,695784,695813,

Note: all start coordinates in our database are 0-based, not 1-based. See explanation here.