Schema for mrnaOrientInfo
  Database: xenTro10    Primary Table: mrnaOrientInfo    Row Count: 31,746   Data last updated: 2021-03-24
Format description: Extra information on ESTs - calculated by polyInfo program
On download server: MariaDB table dump directory
fieldexampleSQL type info description
bin 73smallint(5) unsigned range Indexing field to speed chromosome range queries.
chrom chr1varchar(255) values Reference sequence chromosome or scaffold
chromStart 130007int(10) unsigned range Start position in chromosome
chromEnd 194335int(10) unsigned range End position in chromosome
name BC167718varchar(255) values Accession of EST
intronOrientation 3smallint(6) range Orientation of introns with respect to EST
sizePolyA 116smallint(6) range Number of trailing A's
revSizePolyA 0smallint(6) range Number of trailing A's on reverse strand
signalPos 0smallint(6) range Position of start of polyA signal relative to end of EST or 0 if no signal
revSignalPos 0smallint(6) range PolyA signal position on reverse strand if any

Connected Tables and Joining Fields
        hgFixed.gbCdnaInfo.acc (via mrnaOrientInfo.name)
      hgFixed.gbSeq.acc (via mrnaOrientInfo.name)
      hgFixed.imageClone.acc (via mrnaOrientInfo.name)
      hgFixed.refLink.mrnaAcc (via mrnaOrientInfo.name)
      hgFixed.refSeqStatus.mrnaAcc (via mrnaOrientInfo.name)
      hgFixed.refSeqSummary.mrnaAcc (via mrnaOrientInfo.name)
      knownGeneV39.kgXref.refseq (via mrnaOrientInfo.name)
      knownGeneV39.knownToRefSeq.value (via mrnaOrientInfo.name)
      xenTro10.all_mrna.qName (via mrnaOrientInfo.name)
      xenTro10.refFlat.name (via mrnaOrientInfo.name)
      xenTro10.refGene.name (via mrnaOrientInfo.name)
      xenTro10.refSeqAli.qName (via mrnaOrientInfo.name)

Sample Rows
 
binchromchromStartchromEndnameintronOrientationsizePolyArevSizePolyAsignalPosrevSignalPos
73chr1130007194335BC1677183116000
586chr1200865207751BC135575412301460
586chr1200867205284CT0306133100310
586chr1200867207763BC155039415000
586chr1200932205266MG13624330000
586chr1219439244285BC1677219170390
587chr1350339362705CU0249801124000
587chr1350624360870BC1572451017000
587chr1350681360533BC170999100000
587chr1350683360533BC170997100000

Note: all start coordinates in our database are 0-based, not 1-based. See explanation here.