Schema for mgcFullMrna
  Database: xenTro3    Primary Table: mgcFullMrna    Row Count: 10,221   Data last updated: 2020-01-27
Format description: Summary info about a patSpace alignment
On download server: MariaDB table dump directory
fieldexampleSQL type info description
bin 585smallint(5) unsigned range Indexing field to speed chromosome range queries.
matches 845int(10) unsigned range Number of bases that match that aren't repeats
misMatches 3int(10) unsigned range Number of bases that don't match
repMatches 0int(10) unsigned range Number of bases that match but are part of repeats
nCount 0int(10) unsigned range Number of 'N' bases
qNumInsert 0int(10) unsigned range Number of inserts in query
qBaseInsert 0int(10) unsigned range Number of bases inserted in query
tNumInsert 1int(10) unsigned range Number of inserts in target
tBaseInsert 4341int(10) unsigned range Number of bases inserted in target
strand +char(2) values + or - for strand. First character query, second target (optional)
qName BC171006varchar(255) values Query sequence name
qSize 994int(10) unsigned range Query sequence size
qStart 146int(10) unsigned range Alignment start position in query
qEnd 994int(10) unsigned range Alignment end position in query
tName GL172637varchar(255) values Target sequence name
tSize 7817814int(10) unsigned range Target sequence size
tStart 20066int(10) unsigned range Alignment start position in target
tEnd 25255int(10) unsigned range Alignment end position in target
blockCount 2int(10) unsigned range Number of blocks in alignment
blockSizes 103,745,longblob   Size of each block
qStarts 146,249,longblob   Start of each block in query.
tStarts 20066,24510,longblob   Start of each block in target.

Connected Tables and Joining Fields
        hgFixed.gbCdnaInfo.acc (via mgcFullMrna.qName)
      hgFixed.gbSeq.acc (via mgcFullMrna.qName)
      hgFixed.imageClone.acc (via mgcFullMrna.qName)
      xenTro3.all_mrna.qName (via mgcFullMrna.qName)
      xenTro3.mgcGenes.name (via mgcFullMrna.qName)
      xenTro3.mrnaOrientInfo.name (via mgcFullMrna.qName)

Sample Rows
 
binmatchesmisMatchesrepMatchesnCountqNumInsertqBaseInserttNumInserttBaseInsertstrandqNameqSizeqStartqEndtNametSizetStarttEndblockCountblockSizesqStartstStarts
5858453000014341+BC171006994146994GL172637781781420066252552103,745,146,249,20066,24510,
5858453000014341+BC171012994146994GL172637781781420066252552103,745,146,249,20066,24510,
5858702000014341+BC15599211222361108GL172637781781420066252792106,766,236,342,20066,24513,
5851726100001031139-BC157775174101727GL1726377817814587339159911775,75,109,79,56,87,97,130,122,43,154,14,789,864,973,1052,1108,1195,1292,1422,1544,1587,58733,63050,64382,74344,75918,76176,76539,86918,87798,91226,91445,
731150323000397592-BC157348119101176GL17263778178141165612153294242,130,736,68,15,257,387,1123,116561,122799,206780,215261,
73104500000397592-BC171093104501045GL17263778178141166422152794161,130,736,18,0,161,291,1027,116642,122799,206780,215261,
73104500000397592-BC171094104501045GL17263778178141166422152794161,130,736,18,0,161,291,1027,116642,122799,206780,215261,
5881885000001030520-BC074546193101885GL172637781781446300749541211509,287,73,72,186,168,159,196,92,110,33,46,555,842,915,987,1173,1341,1500,1696,1788,1898,463007,472734,474142,482057,484803,486452,487908,491398,492665,493967,495379,
591264570012316094+BC154851266702654GL17263778178148559408746865592,130,616,1208,106,0,592,722,1338,2548,855940,871387,872751,873372,874580,
592145100014713391-BC091622148131458GL17263778178149700089848509409,443,191,52,70,78,84,49,75,23,436,879,1070,1122,1192,1270,1354,1403,970008,970417,971957,974972,977060,977894,978308,980869,984775,

Note: all start coordinates in our database are 0-based, not 1-based. See explanation here.