Schema for xenoRefFlat
  Database: xenTro7    Primary Table: xenoRefFlat    Row Count: 291,345   Data last updated: 2020-09-02
Format description: A gene prediction with additional geneName field.
On download server: MariaDB table dump directory
fieldexampleSQL type info description
geneName His3:CG33836varchar(255) values Name of gene as it appears in genome browser.
name NM_001032167varchar(255) values Name of gene
chrom KB021654varchar(255) values Reference sequence chromosome or scaffold
strand +char(1) values + or - for strand
txStart 117974432int(10) unsigned range Transcription start position (or end position for minus strand item)
txEnd 117983648int(10) unsigned range Transcription end position (or start position for minus strand item)
cdsStart 117974435int(10) unsigned range Coding region start (or end position for minus strand item)
cdsEnd 117983648int(10) unsigned range Coding region end (or start position for minus strand item)
exonCount 3int(10) unsigned range Number of exons
exonStarts 117974432,117980614,117983512,longblob   Exon start positions (or end positions for minus strand item)
exonEnds 117974561,117980763,117983648,longblob   Exon end positions (or start positions for minus strand item)

Connected Tables and Joining Fields
        hgFixed.gbCdnaInfo.acc (via xenoRefFlat.name)
      hgFixed.gbSeq.acc (via xenoRefFlat.name)
      hgFixed.imageClone.acc (via xenoRefFlat.name)
      xenTro7.xenoRefGene.name (via xenoRefFlat.name)
      xenTro7.xenoRefSeqAli.qName (via xenoRefFlat.name)

Sample Rows
 
geneNamenamechromstrandtxStarttxEndcdsStartcdsEndexonCountexonStartsexonEnds
His3:CG33836NM_001032167KB021654+1179744321179836481179744351179836483117974432,117980614,117983512,117974561,117980763,117983648,
His3:CG33836NM_001032167KB021656-1419087411419091521419087411419091521141908741,141909152,
His3:CG33836NM_001032167KB021656+1419123881419127991419123881419127991141912388,141912799,
His3:CG33836NM_001032167KB021656+1419163231419167341419163231419167341141916323,141916734,
His3:CG33836NM_001032167KB021660+306596830663793065968306637913065968,3066379,
epheNM_001128105KB021661-442137494425140544213749442514051144213749,44215030,44216160,44217390,44219300,44219459,44219614,44250886,44251225,44251297,44251363,44213869,44215183,44216313,44217447,44219426,44219485,44219720,44250937,44251264,44251336,44251405,
CHERPNM_001109798KB021649+12908141712909608012908141712909608021129081417,129082696,129082917,129083166,129083587,129084364,129084572,129086072,129086179,129087074,129090301,129090529,12909080 ...129081591,129082795,129083055,129083169,129083732,129084479,129084667,129086179,129086215,129087191,129090475,129090747,12909080 ...
RXFP1NM_001253732KB021649+17144933017153086517149877117153086512171449330,171479154,171487609,171498771,171501725,171508011,171510756,171512927,171515504,171517644,171530623,171530787,171449451,171479195,171487711,171498842,171501798,171508083,171510827,171513157,171515918,171517863,171530757,171530865,
RpS30NM_169933KB021653-58912421589135785891242158913578258912421,58913521,58912544,58913578,
SypNM_169928KB021649+1873342241873348061873342241873348062187334224,187334428,187334422,187334806,

Note: all start coordinates in our database are 0-based, not 1-based. See explanation here.