Schema for all_est
  Database: xenTro9    Primary Table: all_est    Row Count: 1,277,971   Data last updated: 2017-03-28
Format description: Summary info about a patSpace alignment
On download server: MariaDB table dump directory
fieldexampleSQL type description
bin 586smallint(5) unsigned Indexing field to speed chromosome range queries.
matches 84int(10) unsigned Number of bases that match that aren't repeats
misMatches 0int(10) unsigned Number of bases that don't match
repMatches 0int(10) unsigned Number of bases that match but are part of repeats
nCount 0int(10) unsigned Number of 'N' bases
qNumInsert 0int(10) unsigned Number of inserts in query
qBaseInsert 0int(10) unsigned Number of bases inserted in query
tNumInsert 0int(10) unsigned Number of inserts in target
tBaseInsert 0int(10) unsigned Number of bases inserted in target
strand +char(2) + or - for strand. First character query, second target (optional)
qName AL775807varchar(255) Query sequence name
qSize 84int(10) unsigned Query sequence size
qStart 0int(10) unsigned Alignment start position in query
qEnd 84int(10) unsigned Alignment end position in query
tName chr1varchar(255) Target sequence name
tSize 194866763int(10) unsigned Target sequence size
tStart 179519int(10) unsigned Alignment start position in target
tEnd 179603int(10) unsigned Alignment end position in target
blockCount 1int(10) unsigned Number of blocks in alignment
blockSizes 84,longblob Size of each block
qStarts 0,longblob Start of each block in query.
tStarts 179519,longblob Start of each block in target.

Connected Tables and Joining Fields
        hgFixed.gbCdnaInfo.acc (via all_est.qName)
      hgFixed.gbMiscDiff.acc (via all_est.qName)
      hgFixed.gbSeq.acc (via all_est.qName)
      hgFixed.gbWarn.acc (via all_est.qName)
      hgFixed.imageClone.acc (via all_est.qName)
      xenTro9.all_mrna.qName (via all_est.qName)
      xenTro9.estOrientInfo.name (via all_est.qName)
      xenTro9.intronEst.qName (via all_est.qName)
      xenTro9.refGene.name (via all_est.qName)
      xenTro9.refSeqAli.qName (via all_est.qName)
      xenTro9.xenoRefGene.name (via all_est.qName)
      xenTro9.xenoRefSeqAli.qName (via all_est.qName)

Sample Rows
 
binmatchesmisMatchesrepMatchesnCountqNumInsertqBaseInserttNumInserttBaseInsertstrandqNameqSizeqStartqEndtNametSizetStarttEndblockCountblockSizesqStartstStarts
586840000000+AL77580784084chr1194866763179519179603184,0,179519,
5865471000000+AL80414956214562chr11948667632536942542421548,14,253694,
58939411020000-AL8051764070407chr11948667636288766292831407,0,628876,
5896330000026+AL6503046330633chr11948667636515076521463250,89,294,0,250,339,651507,651760,651852,
5893404000000-AL9715853440344chr11948667636542826546261344,0,654282,
5903131000000-AL673992473159473chr11948667636555126558261314,0,655512,
5903034000000-AL637158622315622chr11948667636555196558261307,0,655519,
594740000000+AL86885181781chr119486676312325701232644174,7,1232570,
594740000000-AL86885181781chr119486676312339371234011174,0,1233937,
597510010000+AL680622671466chr119486676316007341600786152,14,1600734,

Note: all start coordinates in our database are 0-based, not 1-based. See explanation here.