Schema for ensGene
  Database: ailMel1    Primary Table: ensGene    Row Count: 25,055   Data last updated: 2020-08-31
Format description: Ensembl gene predictions.
On download server: MariaDB table dump directory
fieldexampleSQL type info description
bin 73smallint(5) unsigned range Indexing field to speed chromosome range queries.
name ENSAMET00000017883.1varchar(255) values Ensembl transcript ID
chrom GL192338.1varchar(255) values Reference sequence chromosome or scaffold
strand +char(1) values + or - for strand
txStart 74837int(10) unsigned range Transcription start position (or end position for minus strand item)
txEnd 213168int(10) unsigned range Transcription end position (or start position for minus strand item)
cdsStart 74837int(10) unsigned range Coding region start (or end position for minus strand item)
cdsEnd 213168int(10) unsigned range Coding region end (or start position for minus strand item)
exonCount 38int(10) unsigned range Number of exons
exonStarts 74837,118198,129380,133173,...longblob   Exon start positions (or end positions for minus strand item)
exonEnds 76295,118530,129492,133320,...longblob   Exon end positions (or start positions for minus strand item)
score 0int(11) range always 0 for Ensembl genes
name2 ENSAMEG00000016232.1varchar(255) values Ensembl gene ID
cdsStartStat cmplenum('none', 'unk', 'incmpl', 'cmpl') values Status of CDS start annotation (none, unknown, incomplete, or complete)
cdsEndStat cmplenum('none', 'unk', 'incmpl', 'cmpl') values Status of CDS end annotation (none, unknown, incomplete, or complete)
exonFrames 0,0,2,0,0,0,2,0,0,0,2,0,0,0...longblob   Exon frame {0,1,2}, or -1 if no frame for exon

Connected Tables and Joining Fields
        ailMel1.ensGtp.transcript (via ensGene.name)
      ailMel1.ensPep.name (via ensGene.name)
      ailMel1.ensemblSource.name (via ensGene.name)
      ailMel1.ensemblToGeneName.name (via ensGene.name)
      knownGeneV39.knownToEnsembl.value (via ensGene.name)

Sample Rows
 
binnamechromstrandtxStarttxEndcdsStartcdsEndexonCountexonStartsexonEndsscorename2cdsStartStatcdsEndStatexonFrames
73ENSAMET00000017883.1GL192338.1+74837213168748372131683874837,118198,129380,133173,134214,134368,135080,138896,139187,143451,147070,151156,152453,152717,154101,156374,158995,159859,166 ...76295,118530,129492,133320,134283,134424,135198,138983,139325,143573,147314,151333,152597,152973,154312,156570,159163,160039,166 ...0ENSAMEG00000016232.1cmplcmpl0,0,2,0,0,0,2,0,0,0,2,0,0,0,1,2,0,0,0,0,2,1,2,2,1,2,0,1,2,1,1,0,0,1,0,0,0,0,
73ENSAMET00000017960.1GL192338.1+23947728933123947728933123239477,239545,242218,244652,249008,253045,256784,257036,257707,262057,265771,266766,268956,270212,271118,274039,274483,274854,27 ...239543,239710,242349,244853,249073,253174,256945,257101,257894,262224,265878,266873,269094,270377,271230,274309,274764,275031,27 ...0ENSAMEG00000016277.1cmplcmpl0,0,0,2,2,1,1,0,2,0,2,1,0,0,0,1,1,0,0,0,1,0,0,
587ENSAMET00000017981.1GL192338.1-2913662970932913662970939291366,291638,292411,292609,292785,293353,293539,295515,297051,291477,291699,292519,292708,292874,293454,293604,295721,297093,0ENSAMEG00000016345.1cmplcmpl0,2,2,2,0,1,2,0,0,
73ENSAMET00000018009.1GL192338.1-37693146329637693146329632376931,378799,384310,392152,397191,398790,399041,399896,400321,401565,402351,407989,409244,409840,413131,413351,416845,419768,42 ...377041,378933,384395,392336,397202,398802,399053,399906,400377,401604,402367,408063,409395,409939,413215,413542,417224,419920,42 ...0ENSAMEG00000016363.1incmplcmpl1,2,1,0,1,1,1,0,1,1,0,1,0,0,0,1,0,1,1,0,0,0,1,2,0,0,2,2,1,2,1,0,
73ENSAMET00000018031.1GL192338.1+4664428391254664428391259466442,568944,582887,597425,628766,635577,642936,684093,838974,466487,569022,583512,597569,628846,635721,643056,684218,839125,0ENSAMEG00000016388.1cmplincmpl0,0,0,1,1,0,0,0,2,
591ENSAMET00000024126.1GL192338.1-8924048925058925058925051892404,892505,0ENSAMEG00000022303.1nonenone-1,
9ENSAMET00000018032.1GL192338.1-974538114938697453811493864974538,974630,975476,1149311,974628,975299,975563,1149386,0ENSAMEG00000016409.1incmplincmpl0,0,0,0,
596ENSAMET00000018037.1GL192338.1+153004915325921530049153259251530049,1530303,1531376,1531596,1532079,1530259,1530316,1531518,1532068,1532592,0ENSAMEG00000016410.1cmplcmpl0,0,1,2,0,
597ENSAMET00000024027.1GL192338.1+161389416139771613977161397711613894,1613977,0ENSAMEG00000022204.1nonenone-1,
598ENSAMET00000024624.1GL192338.1+182688318269761826976182697611826883,1826976,0ENSAMEG00000022801.1nonenone-1,

Note: all start coordinates in our database are 0-based, not 1-based. See explanation here.