Schema for xenoRefSeqAli
  Database: ailMel1    Primary Table: xenoRefSeqAli    Row Count: 402,766   Data last updated: 2020-08-17
Format description: Summary info about a patSpace alignment
On download server: MariaDB table dump directory
fieldexampleSQL type info description
bin 598smallint(5) unsigned range Indexing field to speed chromosome range queries.
matches 1565int(10) unsigned range Number of bases that match that aren't repeats
misMatches 278int(10) unsigned range Number of bases that don't match
repMatches 0int(10) unsigned range Number of bases that match but are part of repeats
nCount 0int(10) unsigned range Number of 'N' bases
qNumInsert 5int(10) unsigned range Number of inserts in query
qBaseInsert 668int(10) unsigned range Number of bases inserted in query
tNumInsert 11int(10) unsigned range Number of inserts in target
tBaseInsert 7505int(10) unsigned range Number of bases inserted in target
strand +-char(2) values + or - for strand. First character query, second target (optional)
qName NM_001205677varchar(255) values Query sequence name
qSize 2667int(10) unsigned range Query sequence size
qStart 0int(10) unsigned range Alignment start position in query
qEnd 2511int(10) unsigned range Alignment end position in query
tName GL192592.1varchar(255) values Target sequence name
tSize 1922131int(10) unsigned range Target sequence size
tStart 1770341int(10) unsigned range Alignment start position in target
tEnd 1779689int(10) unsigned range Alignment end position in target
blockCount 12int(10) unsigned range Number of blocks in alignment
blockSizes 60,17,241,141,410,129,178,3...longblob   Size of each block
qStarts 0,60,77,318,486,896,1025,12...longblob   Start of each block in query.
tStarts 142442,142505,144194,145326...longblob   Start of each block in target.

Connected Tables and Joining Fields
        ailMel1.all_est.qName (via xenoRefSeqAli.qName)
      ailMel1.all_mrna.qName (via xenoRefSeqAli.qName)
      ailMel1.xenoMrna.qName (via xenoRefSeqAli.qName)
      ailMel1.xenoRefFlat.name (via xenoRefSeqAli.qName)
      ailMel1.xenoRefGene.name (via xenoRefSeqAli.qName)
      hgFixed.gbCdnaInfo.acc (via xenoRefSeqAli.qName)
      hgFixed.gbMiscDiff.acc (via xenoRefSeqAli.qName)
      hgFixed.gbSeq.acc (via xenoRefSeqAli.qName)
      hgFixed.gbWarn.acc (via xenoRefSeqAli.qName)
      hgFixed.imageClone.acc (via xenoRefSeqAli.qName)

Sample Rows
 
binmatchesmisMatchesrepMatchesnCountqNumInsertqBaseInserttNumInserttBaseInsertstrandqNameqSizeqStartqEndtNametSizetStarttEndblockCountblockSizesqStartstStarts
5981565278005668117505+-NM_001205677266702511GL192592.11922131177034117796891260,17,241,141,410,129,178,317,71,103,107,69,0,60,77,318,486,896,1025,1203,1627,1709,2131,2442,142442,142505,144194,145326,145494,147574,149073,150276,150704,150779,151417,151721,
58553882001081697933+-NM_00136376919565171953GL192595.1191027230590391431434,92,50,69,15,39,12,6,6,4,102,19,57,115,517,551,643,694,789,1318,1393,1406,1412,1419,1457,1560,1770,1838,1871129,1874127,1878401,1878451,1878985,1879042,1879122,1879134,1879141,1879147,1879188,1879290,1879494,1879567,
5888721002673277095++NM_001206899459134804261GL192595.11910272426662503865348,36,24,3480,3995,4237,426662,472480,503841,
739106130802526106165204886++NM_177224115171711517GL192338.160478964772158026864,87,656,717,48,332,112,147,69,54,118,87,138,122,244,177,147,253,207,200,168,180,111,199,198,161,87,106,118,58,43,2,218,203,707 ...17,205,359,1052,1772,1820,2152,2264,2411,2480,2536,2654,2741,2879,3001,3245,3422,3569,3822,4029,4229,4397,4577,4688,4887,5085,52 ...477,74673,74825,75530,76247,118198,129380,133173,134214,134368,135080,138896,139187,143451,147070,151156,152453,152720,154101,15 ...
9211670051247540265++NM_00101805475273311856GL192457.1265042010242571064800663,87,36,39,14,39,331,422,666,713,1073,1817,1024257,1060043,1060261,1061253,1061510,1064761,
59312951040071332038001+-NM_001286256157801532GL192457.126504201066168110556821138,9,25,134,104,100,75,95,67,48,88,52,138,106,60,21,47,36,18,5,33,0,153,162,187,357,461,561,637,732,799,847,935,987,1125,1233,1323,1347,1394,1476,1494,1499,1544852,1544999,1545015,1546113,1546283,1547035,1547346,1548318,1549970,1550220,1550565,1550824,1550955,1551504,1551611,1551701, ...
59399079006971738331+-NM_001286257121201166GL192457.126504201066168110556818138,9,33,75,95,67,48,88,52,138,106,60,21,47,36,18,5,33,0,153,162,195,271,366,433,481,569,621,759,867,957,981,1028,1110,1128,1133,1544852,1544999,1545015,1547346,1548318,1549970,1550220,1550565,1550824,1550955,1551504,1551611,1551701,1551724,1551772,1551857, ...
5931564152005411143458++NM_001166356212702127GL192457.12650420108458310897571557,199,80,200,82,93,145,161,95,161,108,161,64,27,83,0,100,299,379,580,662,755,900,1061,1156,1317,1425,1861,1943,2044,1084583,1085676,1086385,1086641,1087125,1087373,1087593,1088094,1088442,1088623,1088868,1089088,1089502,1089585,1089674,
5931579152005408142998++NM_0011663582159202159GL192457.12650420108502810897571542,199,80,200,82,123,145,161,95,161,108,161,64,27,83,20,102,301,381,582,664,787,932,1093,1188,1349,1457,1893,1975,2076,1085028,1085676,1086385,1086641,1087125,1087343,1087593,1088094,1088442,1088623,1088868,1089088,1089502,1089585,1089674,
5941559178007163194046+-NM_0010801561993551955GL192457.12650420128988012956632026,216,118,50,62,91,96,99,54,58,107,99,78,54,135,106,195,30,33,30,55,81,303,462,512,574,665,761,860,935,994,1101,1200,1278,1332,1467,1573,1802,1854,1925,1354757,1354887,1355288,1355657,1355968,1356174,1356465,1356708,1357062,1357451,1357602,1358036,1358315,1358534,1358843,1359450, ...

Note: all start coordinates in our database are 0-based, not 1-based. See explanation here.