Schema for ensGene
  Database: anoGam3    Primary Table: ensGene    Row Count: 15,632   Data last updated: 2018-01-06
Format description: Ensembl gene predictions.
On download server: MariaDB table dump directory
fieldexampleSQL type info description
bin 586smallint(5) unsigned range Indexing field to speed chromosome range queries.
name AGAP004677-RBvarchar(255) values Ensembl transcript ID
chrom chr2Lvarchar(255) values Reference sequence chromosome or scaffold
strand -char(1) values + or - for strand
txStart 157347int(10) unsigned range Transcription start position (or end position for minus strand item)
txEnd 186936int(10) unsigned range Transcription end position (or start position for minus strand item)
cdsStart 157495int(10) unsigned range Coding region start (or end position for minus strand item)
cdsEnd 159356int(10) unsigned range Coding region end (or start position for minus strand item)
exonCount 4int(10) unsigned range Number of exons
exonStarts 157347,157678,159191,186859,longblob   Exon start positions (or end positions for minus strand item)
exonEnds 157623,158297,159366,186936,longblob   Exon end positions (or start positions for minus strand item)
score 0int(11) range always 0 for Ensembl genes
name2 AGAP004677varchar(255) values Ensembl gene ID
cdsStartStat cmplenum('none', 'unk', 'incmpl', 'cmpl') values Status of CDS start annotation (none, unknown, incomplete, or complete)
cdsEndStat cmplenum('none', 'unk', 'incmpl', 'cmpl') values Status of CDS end annotation (none, unknown, incomplete, or complete)
exonFrames 1,0,0,-1,longblob   Exon frame {0,1,2}, or -1 if no frame for exon

Connected Tables and Joining Fields
        anoGam3.ensGtp.transcript (via ensGene.name)
      anoGam3.ensPep.name (via ensGene.name)
      anoGam3.ensemblSource.name (via ensGene.name)
      anoGam3.ensemblToGeneName.name (via ensGene.name)
      knownGeneV39.knownToEnsembl.value (via ensGene.name)

Sample Rows
 
binnamechromstrandtxStarttxEndcdsStartcdsEndexonCountexonStartsexonEndsscorename2cdsStartStatcdsEndStatexonFrames
586AGAP004677-RBchr2L-1573471869361574951593564157347,157678,159191,186859,157623,158297,159366,186936,0AGAP004677cmplcmpl1,0,0,-1,
586AGAP004677-RAchr2L-1573471813051574951812134157347,157678,159191,180908,157623,158297,159366,181305,0AGAP004677cmplcmpl1,0,2,0,
586AGAP004678-RAchr2L+2037782052932038652049562203778,203980,203924,205293,0AGAP004678cmplcmpl0,2,
586AGAP004679-RBchr2L+2078932104602084162102766207893,208392,208638,208896,209472,209876,207953,208581,208824,209394,209816,210460,0AGAP004679cmplcmpl-1,0,0,0,0,2,
586AGAP004679-RAchr2L+2081822104602084162102765208182,208638,208896,209472,209876,208581,208824,209394,209816,210460,0AGAP004679cmplcmpl0,0,0,0,2,
587AGAP004680-RAchr2L+2712842718152712842718151271284,271815,0AGAP004680cmplcmpl0,
587AGAP004681-RAchr2L-3583283592803586393591452358328,358976,358881,359280,0AGAP004681cmplcmpl1,0,
588AGAP004682-RAchr2L-4335024616274335024610823433502,460184,461513,434254,461391,461627,0AGAP004682cmplcmpl1,0,-1,
588AGAP028431-RAchr2L-4779204846474826304833845477920,482617,482788,483375,483974,479912,482709,483015,483905,484647,0AGAP028431cmplcmpl-1,2,0,0,-1,
588AGAP004683-RAchr2L-4856974883694857364883692485697,486670,486245,488369,0AGAP004683cmplcmpl1,0,

Note: all start coordinates in our database are 0-based, not 1-based. See explanation here.