Schema for mrnaOrientInfo
  Database: aptMan1    Primary Table: mrnaOrientInfo    Row Count: 10   Data last updated: 2020-05-05
Format description: Extra information on ESTs - calculated by polyInfo program
On download server: MariaDB table dump directory
fieldexampleSQL type info description
bin 585smallint(5) unsigned range Indexing field to speed chromosome range queries.
chrom NW_013987543v1varchar(255) values Reference sequence chromosome or scaffold
chromStart 18int(10) unsigned range Start position in chromosome
chromEnd 107int(10) unsigned range End position in chromosome
name HQ639684varchar(255) values Accession of EST
intronOrientation 0smallint(6) range Orientation of introns with respect to EST
sizePolyA 0smallint(6) range Number of trailing A's
revSizePolyA 0smallint(6) range Number of trailing A's on reverse strand
signalPos 22smallint(6) range Position of start of polyA signal relative to end of EST or 0 if no signal
revSignalPos 0smallint(6) range PolyA signal position on reverse strand if any

Connected Tables and Joining Fields
        aptMan1.all_mrna.qName (via mrnaOrientInfo.name)
      aptMan1.refFlat.name (via mrnaOrientInfo.name)
      aptMan1.refGene.name (via mrnaOrientInfo.name)
      aptMan1.refSeqAli.qName (via mrnaOrientInfo.name)
      hgFixed.gbCdnaInfo.acc (via mrnaOrientInfo.name)
      hgFixed.gbSeq.acc (via mrnaOrientInfo.name)
      hgFixed.imageClone.acc (via mrnaOrientInfo.name)
      hgFixed.refLink.mrnaAcc (via mrnaOrientInfo.name)
      hgFixed.refSeqStatus.mrnaAcc (via mrnaOrientInfo.name)
      hgFixed.refSeqSummary.mrnaAcc (via mrnaOrientInfo.name)
      knownGeneV39.kgXref.refseq (via mrnaOrientInfo.name)
      knownGeneV39.knownToRefSeq.value (via mrnaOrientInfo.name)

Sample Rows
 
binchromchromStartchromEndnameintronOrientationsizePolyArevSizePolyAsignalPosrevSignalPos
585NW_013987543v118107HQ639684000220
585NW_013987543v118107HQ639685000220
585NW_013987543v161197295HQ63968610000
585NW_013987543v161197408HQ639684200220
585NW_013987543v161197408HQ639685200220
585NW_013990412v177187989HQ63968700000
585NW_013994694v125933111HQ63968710000
585NW_013996856v11241814147HQ639683400240
644NW_014000569v178069897821116S7877880000
586NW_013989391v1205389252760NM_00131549870000

Note: all start coordinates in our database are 0-based, not 1-based. See explanation here.