Schema for xenoRefFlat
  Database: aquChr2    Primary Table: xenoRefFlat    Row Count: 381,519   Data last updated: 2020-08-18
Format description: A gene prediction with additional geneName field.
On download server: MariaDB table dump directory
fieldexampleSQL type info description
geneName GOLGA7varchar(255) values Name of gene as it appears in genome browser.
name NM_001006570varchar(255) values Name of gene
chrom KN265666v1varchar(255) values Reference sequence chromosome or scaffold
strand -char(1) values + or - for strand
txStart 10217319int(10) unsigned range Transcription start position (or end position for minus strand item)
txEnd 10224792int(10) unsigned range Transcription end position (or start position for minus strand item)
cdsStart 10221192int(10) unsigned range Coding region start (or end position for minus strand item)
cdsEnd 10224600int(10) unsigned range Coding region end (or start position for minus strand item)
exonCount 14int(10) unsigned range Number of exons
exonStarts 10217319,10217472,10217567,...longblob   Exon start positions (or end positions for minus strand item)
exonEnds 10217398,10217544,10217609,...longblob   Exon end positions (or start positions for minus strand item)

Connected Tables and Joining Fields
        aquChr2.xenoRefGene.name (via xenoRefFlat.name)
      aquChr2.xenoRefSeqAli.qName (via xenoRefFlat.name)
      hgFixed.gbCdnaInfo.acc (via xenoRefFlat.name)
      hgFixed.gbSeq.acc (via xenoRefFlat.name)
      hgFixed.imageClone.acc (via xenoRefFlat.name)

Sample Rows
 
geneNamenamechromstrandtxStarttxEndcdsStartcdsEndexonCountexonStartsexonEnds
GOLGA7NM_001006570KN265666v1-102173191022479210221192102246001410217319,10217472,10217567,10217731,10217857,10217893,10218237,10218328,10218420,10221176,10222417,10222874,10224489,10224675,10217398,10217544,10217609,10217825,10217884,10218222,10218310,10218350,10218597,10221240,10222519,10223027,10224600,10224792,
ENS-1NM_001080873KN265688v1-764018876469937646176764699337640188,7646176,7646404,7640214,7646266,7646993,
Scube1NM_001271472KN265799v1-67571288300367571288300322675712,677029,678146,680782,682418,682452,683510,686820,688425,689702,699142,703815,726341,747371,767882,770848,778585,778971,83 ...675865,677104,678298,680978,682420,682614,683676,686970,688626,689825,699256,703931,726464,747488,767975,770962,778588,779090,83 ...
Dis3NM_001275981KN265655v1+21664074216756352166407421675635221664074,21675521,21664128,21675635,
Dis3NM_001275981KN265693v1-7177993719262471779937192624137177993,7178538,7178619,7179805,7179874,7181672,7184366,7185083,7186058,7187374,7188476,7188615,7192534,7178059,7178598,7178697,7179862,7179976,7181822,7184414,7185176,7186136,7187515,7188479,7188744,7192624,
wocNM_001276081KN265698v1-173044517380501730445173805061730445,1731989,1733097,1734682,1736077,1737987,1730529,1732049,1733241,1734718,1736182,1738050,
Mir32NR_105205KN265740v1+477844347785244778524477852414778443,4778524,
ATG9ANM_001190275KN265653v1+173406491734879317340649173487931617340649,17341092,17341121,17342514,17342871,17343137,17344234,17345351,17345734,17346793,17346970,17347343,17347975,17348281,17 ...17340752,17341096,17341161,17342579,17343034,17343278,17344983,17345508,17345908,17346959,17347042,17347487,17348086,17348374,17 ...
Col10a1NM_009925KN265686v1+920139092032539201390920325329201390,9202857,9202770,9203253,
OxtNM_011025KN265721v1-325721232577093257212325770633257212,3257275,3257586,3257272,3257429,3257709,

Note: all start coordinates in our database are 0-based, not 1-based. See explanation here.