Schema for mrnaOrientInfo
  Database: bisBis1    Primary Table: mrnaOrientInfo    Row Count: 1   Data last updated: 2015-05-28
Format description: Extra information on ESTs - calculated by polyInfo program
On download server: MariaDB table dump directory
fieldexampleSQL type info description
bin 611smallint(5) unsigned range Indexing field to speed chromosome range queries.
chrom KN264753v1varchar(255) values Reference sequence chromosome or scaffold
chromStart 3441604int(10) unsigned range Start position in chromosome
chromEnd 3443783int(10) unsigned range End position in chromosome
name NM_001305453varchar(255) values Accession of EST
intronOrientation 0smallint(6) range Orientation of introns with respect to EST
sizePolyA 0smallint(6) range Number of trailing A's
revSizePolyA 0smallint(6) range Number of trailing A's on reverse strand
signalPos 0smallint(6) range Position of start of polyA signal relative to end of EST or 0 if no signal
revSignalPos 0smallint(6) range PolyA signal position on reverse strand if any

Connected Tables and Joining Fields
        bisBis1.refFlat.name (via mrnaOrientInfo.name)
      bisBis1.refGene.name (via mrnaOrientInfo.name)
      bisBis1.refSeqAli.qName (via mrnaOrientInfo.name)
      hgFixed.gbCdnaInfo.acc (via mrnaOrientInfo.name)
      hgFixed.gbSeq.acc (via mrnaOrientInfo.name)
      hgFixed.imageClone.acc (via mrnaOrientInfo.name)
      hgFixed.refLink.mrnaAcc (via mrnaOrientInfo.name)
      hgFixed.refSeqStatus.mrnaAcc (via mrnaOrientInfo.name)
      hgFixed.refSeqSummary.mrnaAcc (via mrnaOrientInfo.name)
      knownGeneV39.kgXref.refseq (via mrnaOrientInfo.name)
      knownGeneV39.knownToRefSeq.value (via mrnaOrientInfo.name)

Sample Rows
 
binchromchromStartchromEndnameintronOrientationsizePolyArevSizePolyAsignalPosrevSignalPos
611KN264753v134416043443783NM_00130545300000

Note: all start coordinates in our database are 0-based, not 1-based. See explanation here.