Schema for ensGene
  Database: bosTau6    Primary Table: ensGene    Row Count: 26,740   Data last updated: 2018-05-08
Format description: Ensembl gene predictions.
On download server: MariaDB table dump directory
fieldexampleSQL type info description
bin 585smallint(5) unsigned range Indexing field to speed chromosome range queries.
name ENSBTAT00000064346.1varchar(255) values Ensembl transcript ID
chrom chr1varchar(255) values Reference sequence chromosome or scaffold
strand -char(1) values + or - for strand
txStart 19773int(10) unsigned range Transcription start position (or end position for minus strand item)
txEnd 19899int(10) unsigned range Transcription end position (or start position for minus strand item)
cdsStart 19899int(10) unsigned range Coding region start (or end position for minus strand item)
cdsEnd 19899int(10) unsigned range Coding region end (or start position for minus strand item)
exonCount 1int(10) unsigned range Number of exons
exonStarts 19773,longblob   Exon start positions (or end positions for minus strand item)
exonEnds 19899,longblob   Exon end positions (or start positions for minus strand item)
score 0int(11) range always 0 for Ensembl genes
name2 ENSBTAG00000046619.1varchar(255) values Ensembl gene ID
cdsStartStat noneenum('none', 'unk', 'incmpl', 'cmpl') values Status of CDS start annotation (none, unknown, incomplete, or complete)
cdsEndStat noneenum('none', 'unk', 'incmpl', 'cmpl') values Status of CDS end annotation (none, unknown, incomplete, or complete)
exonFrames -1,longblob   Exon frame {0,1,2}, or -1 if no frame for exon

Connected Tables and Joining Fields
        bosTau6.ensGtp.transcript (via ensGene.name)
      bosTau6.ensPep.name (via ensGene.name)
      bosTau6.ensemblSource.name (via ensGene.name)
      bosTau6.ensemblToGeneName.name (via ensGene.name)
      knownGeneV39.knownToEnsembl.value (via ensGene.name)

Sample Rows
 
binnamechromstrandtxStarttxEndcdsStartcdsEndexonCountexonStartsexonEndsscorename2cdsStartStatcdsEndStatexonFrames
585ENSBTAT00000064346.1chr1-19773198991989919899119773,19899,0ENSBTAG00000046619.1nonenone-1,
585ENSBTAT00000009004.5chr1+34626355583555835558234626,35015,35013,35558,0ENSBTAG00000006858.5nonenone-1,-1,
585ENSBTAT00000052762.2chr1-69694711216969471121569694,70095,70215,70412,70857,69712,70122,70410,70856,71121,0ENSBTAG00000039257.2incmplcmpl0,0,0,0,0,
585ENSBTAT00000057220.2chr1-83322842818428184281283322,83364,83347,84281,0ENSBTAG00000035349.3nonenone-1,-1,
73ENSBTAT00000002299.4chr1-1248481797131248521797136124848,135819,137157,137833,138874,178432,125014,136001,137264,137959,138984,179713,0ENSBTAG00000001753.4cmplcmpl0,1,2,2,0,0,
587ENSBTAT00000007283.4chr1-2642972648432642972648431264297,264843,0ENSBTAG00000005540.4cmplcmpl0,
587ENSBTAT00000037243.2chr1+3517073629073517873613084351707,355063,357792,361135,351874,355237,357952,362907,0ENSBTAG00000020035.4cmplcmpl0,0,0,1,
588ENSBTAT00000001530.2chr1+4012054077004071224075123401205,402256,407072,401277,402351,407700,0ENSBTAG00000001150.2cmplcmpl-1,-1,0,
588ENSBTAT00000037244.3chr1+4219444222804219444222801421944,422280,0ENSBTAG00000026259.3cmplcmpl0,
588ENSBTAT00000018387.2chr1-4598114608304600104607661459811,460830,0ENSBTAG00000013841.2cmplcmpl0,

Note: all start coordinates in our database are 0-based, not 1-based. See explanation here.