Schema for estOrientInfo
  Database: bosTau6    Primary Table: estOrientInfo    Row Count: 1,714,294   Data last updated: 2016-06-11
Format description: Extra information on ESTs - calculated by polyInfo program
On download server: MariaDB table dump directory
fieldexampleSQL type description
bin 703smallint(5) unsigned Indexing field to speed chromosome range queries.
chrom chr10varchar(255) Reference sequence chromosome or scaffold
chromStart 15542989int(10) unsigned Start position in chromosome
chromEnd 15543685int(10) unsigned End position in chromosome
name AA908027varchar(255) Accession of EST
intronOrientation 0smallint(6) Orientation of introns with respect to EST
sizePolyA 26smallint(6) Number of trailing A's
revSizePolyA 0smallint(6) Number of trailing A's on reverse strand
signalPos 43smallint(6) Position of start of polyA signal relative to end of EST or 0 if no signal
revSignalPos 0smallint(6) PolyA signal position on reverse strand if any

Connected Tables and Joining Fields
        bosTau6.all_est.qName (via estOrientInfo.name)
      bosTau6.intronEst.qName (via estOrientInfo.name)
      hgFixed.gbCdnaInfo.acc (via estOrientInfo.name)
      hgFixed.gbSeq.acc (via estOrientInfo.name)
      hgFixed.imageClone.acc (via estOrientInfo.name)

Sample Rows
 
binchromchromStartchromEndnameintronOrientationsizePolyArevSizePolyAsignalPosrevSignalPos
703chr101554298915543685AA9080270260430
744chr112093637820936962AA90802900600
744chr112093763720938050AA90802800100
745chr112109420721094671AA90802500000
873chr113782391737825467AA961327-2016042
873chr113782391837825464AA9613282190430
944chr114716959447174566AA90802610000
1255chr118787307987873675AA9080190320044
844chr133406128134061706AA9613310017041
844chr133406128234062017AA9613290118041

Note: all start coordinates in our database are 0-based, not 1-based. See explanation here.