Schema for xenoRefFlat
  Database: bosTau7    Primary Table: xenoRefFlat    Row Count: 324,139   Data last updated: 2020-08-20
Format description: A gene prediction with additional geneName field.
On download server: MariaDB table dump directory
fieldexampleSQL type info description
geneName SIPA1L1varchar(255) values Name of gene as it appears in genome browser.
name NM_001266525varchar(255) values Name of gene
chrom chr10varchar(255) values Reference sequence chromosome or scaffold
strand -char(1) values + or - for strand
txStart 85342335int(10) unsigned range Transcription start position (or end position for minus strand item)
txEnd 85390212int(10) unsigned range Transcription end position (or start position for minus strand item)
cdsStart 85342553int(10) unsigned range Coding region start (or end position for minus strand item)
cdsEnd 85390212int(10) unsigned range Coding region end (or start position for minus strand item)
exonCount 16int(10) unsigned range Number of exons
exonStarts 85342335,85342384,85342551,...longblob   Exon start positions (or end positions for minus strand item)
exonEnds 85342350,85342501,85342697,...longblob   Exon end positions (or start positions for minus strand item)

Connected Tables and Joining Fields
        bosTau7.xenoMrna.qName (via xenoRefFlat.name)
      bosTau7.xenoRefGene.name (via xenoRefFlat.name)
      bosTau7.xenoRefSeqAli.qName (via xenoRefFlat.name)
      hgFixed.gbCdnaInfo.acc (via xenoRefFlat.name)
      hgFixed.gbSeq.acc (via xenoRefFlat.name)
      hgFixed.imageClone.acc (via xenoRefFlat.name)

Sample Rows
 
geneNamenamechromstrandtxStarttxEndcdsStartcdsEndexonCountexonStartsexonEnds
SIPA1L1NM_001266525chr10-853423358539021285342553853902121685342335,85342384,85342551,85343829,85346900,85348364,85351708,85356924,85357858,85357998,85378711,85382714,85383275,85385649,85 ...85342350,85342501,85342697,85343914,85347015,85348511,85351955,85357090,85357966,85358098,85379154,85382833,85383338,85385774,85 ...
Cd200r1NM_021325chr1+58511404585518505854586158551523658511404,58545861,58545959,58549635,58551466,58551808,58511487,58545933,58546073,58549689,58551523,58551850,
ATXN7L3NM_001382313chr19-450363894504363845038873450423451845036389,45036673,45037693,45038124,45039134,45039384,45039719,45040025,45040382,45040611,45040978,45041188,45041487,45041862,45 ...45036661,45037664,45038110,45039022,45039292,45039456,45039763,45040094,45040411,45040657,45041001,45041286,45041659,45041995,45 ...
hnrnpa3.LNM_001087849chr2-202589982026255520259466202625551120258998,20259089,20259466,20259615,20261141,20261328,20261361,20261488,20261903,20262194,20262429,20259070,20259345,20259508,20259726,20261225,20261361,20261408,20261578,20262114,20262341,20262555,
AKTIPNM_001131449chr18-210206652102849321021684210275221321020665,21021225,21021376,21021583,21021958,21022793,21022989,21023167,21023761,21023946,21026096,21027480,21028447,21021180,21021238,21021572,21021795,21022019,21022897,21023092,21023256,21023862,21024011,21026300,21027554,21028493,
SLC38A9NR_047649chr20+250342252511280425112804251128041625034225,25053784,25057341,25057597,25057891,25058106,25059788,25064780,25067755,25079121,25094574,25104135,25106333,25110858,25 ...25034455,25053917,25057463,25057661,25057983,25058110,25059957,25064840,25067950,25079229,25094681,25104249,25106447,25110948,25 ...
REV3LNM_001286431chr9+411894914136805241252004413670694141189491,41189519,41190016,41190138,41190240,41190285,41200466,41251900,41257733,41261170,41268702,41275186,41275842,41276796,41 ...41189509,41189614,41190088,41190201,41190255,41190510,41200595,41252099,41257808,41261335,41268752,41275281,41275947,41276881,41 ...
ube2d2lNM_199952chrUn_JH123195-16627179051662717902216627,17598,16767,17905,
ube2d2lNM_199952chrUn_JH123281-13683141311368414128113683,14131,
Adra2aNM_007417chr26+319508233195442431951549319529561831950823,31951055,31951116,31951187,31951264,31951402,31952319,31952662,31953286,31953321,31953444,31953660,31953928,31954008,31 ...31951002,31951099,31951140,31951248,31951340,31952315,31952593,31953027,31953306,31953338,31953480,31953863,31953946,31954130,31 ...

Note: all start coordinates in our database are 0-based, not 1-based. See explanation here.