Schema for all_est
  Database: bosTau8    Primary Table: all_est    Row Count: 1,714,149   Data last updated: 2015-02-14
Format description: Summary info about a patSpace alignment
On download server: MariaDB table dump directory
fieldexampleSQL type description
bin 703smallint(5) unsigned Indexing field to speed chromosome range queries.
matches 649int(10) unsigned Number of bases that match that aren't repeats
misMatches 15int(10) unsigned Number of bases that don't match
repMatches 0int(10) unsigned Number of bases that match but are part of repeats
nCount 14int(10) unsigned Number of 'N' bases
qNumInsert 2int(10) unsigned Number of inserts in query
qBaseInsert 13int(10) unsigned Number of bases inserted in query
tNumInsert 6int(10) unsigned Number of inserts in target
tBaseInsert 18int(10) unsigned Number of bases inserted in target
strand +char(2) + or - for strand. First character query, second target (optional)
qName AA908027varchar(255) Query sequence name
qSize 772int(10) unsigned Query sequence size
qStart 0int(10) unsigned Alignment start position in query
qEnd 691int(10) unsigned Alignment end position in query
tName chr10varchar(255) Target sequence name
tSize 104305016int(10) unsigned Target sequence size
tStart 15542989int(10) unsigned Alignment start position in target
tEnd 15543685int(10) unsigned Alignment end position in target
blockCount 8int(10) unsigned Number of blocks in alignment
blockSizes 431,25,75,31,13,19,9,75,longblob Size of each block
qStarts 0,431,456,531,562,587,606,616,longblob Start of each block in query.
tStarts 15542989,15543421,15543447,...longblob Start of each block in target.

Connected Tables and Joining Fields
        bosTau8.all_mrna.qName (via all_est.qName)
      bosTau8.estOrientInfo.name (via all_est.qName)
      bosTau8.intronEst.qName (via all_est.qName)
      bosTau8.refGene.name (via all_est.qName)
      bosTau8.refSeqAli.qName (via all_est.qName)
      bosTau8.xenoRefGene.name (via all_est.qName)
      bosTau8.xenoRefSeqAli.qName (via all_est.qName)
      hgFixed.gbCdnaInfo.acc (via all_est.qName)
      hgFixed.gbMiscDiff.acc (via all_est.qName)
      hgFixed.gbSeq.acc (via all_est.qName)
      hgFixed.gbWarn.acc (via all_est.qName)
      hgFixed.imageClone.acc (via all_est.qName)

Sample Rows
 
binmatchesmisMatchesrepMatchesnCountqNumInsertqBaseInserttNumInserttBaseInsertstrandqNameqSizeqStartqEndtNametSizetStarttEndblockCountblockSizesqStartstStarts
70364915014213618+AA9080277720691chr1010430501615542989155436858431,25,75,31,13,19,9,75,0,431,456,531,562,587,606,616,15542989,15543421,15543447,15543523,15543555,15543581,15543601,15543610,
7445722010079+AA9080296596581chr1110731076320936378209369628505,11,7,3,15,20,4,10,6,511,522,529,532,547,567,571,20936378,20936884,20936897,20936905,20936909,20936925,20936946,20936952,
7444091030000-AA90802843118431chr1110731076320937637209380501413,0,20937637,
7454593022200+AA90802549024490chr1110731076321094207210946713449,9,6,24,474,484,21094207,21094656,21094665,
8734290011131120-AA96132745316447chr111073107633782391737825467521,4,84,132,189,6,28,32,116,248,37823917,37823938,37824292,37824750,37825278,
8734250003641121+AA9613284510431chr111073107633782391837825464723,86,132,137,8,12,27,0,23,109,241,382,391,404,37823918,37824290,37824750,37825278,37825417,37825425,37825437,
944475601047124481+AA90802653032530chr1110731076347169594471745661438,251,88,4,33,3,16,4,11,5,6,11,8,13,32,70,321,410,414,447,450,466,470,481,490,497,508,517,47169594,47174094,47174346,47174434,47174439,47174473,47174477,47174494,47174499,47174511,47174521,47174529,47174541,47174553,
125557670111122-AA90801970320615chr111073107638787307987873675458,91,16,429,88,146,238,254,87873079,87873138,87873229,87873246,
8444202032300+AA96133145317445chr138424035034061281340617063274,118,33,17,292,412,34061281,34061555,34061673,
8442855016151429+AA96132979618329chr138424035034061282340620172292,14,18,315,34061282,34062003,

Note: all start coordinates in our database are 0-based, not 1-based. See explanation here.