Schema for xenoRefFlat
  Database: caePb1    Primary Table: xenoRefFlat    Row Count: 298,212   Data last updated: 2020-08-20
Format description: A gene prediction with additional geneName field.
On download server: MariaDB table dump directory
fieldexampleSQL type info description
geneName clec-199varchar(255) values Name of gene as it appears in genome browser.
name NM_001313015varchar(255) values Name of gene
chrom chrUnvarchar(255) values Reference sequence chromosome or scaffold
strand -char(1) values + or - for strand
txStart 165946524int(10) unsigned range Transcription start position (or end position for minus strand item)
txEnd 165946605int(10) unsigned range Transcription end position (or start position for minus strand item)
cdsStart 165946524int(10) unsigned range Coding region start (or end position for minus strand item)
cdsEnd 165946605int(10) unsigned range Coding region end (or start position for minus strand item)
exonCount 1int(10) unsigned range Number of exons
exonStarts 165946524,longblob   Exon start positions (or end positions for minus strand item)
exonEnds 165946605,longblob   Exon end positions (or start positions for minus strand item)

Connected Tables and Joining Fields
        caePb1.xenoMrna.qName (via xenoRefFlat.name)
      caePb1.xenoRefGene.name (via xenoRefFlat.name)
      caePb1.xenoRefSeqAli.qName (via xenoRefFlat.name)
      hgFixed.gbCdnaInfo.acc (via xenoRefFlat.name)
      hgFixed.gbSeq.acc (via xenoRefFlat.name)
      hgFixed.imageClone.acc (via xenoRefFlat.name)

Sample Rows
 
geneNamenamechromstrandtxStarttxEndcdsStartcdsEndexonCountexonStartsexonEnds
clec-199NM_001313015chrUn-1659465241659466051659465241659466051165946524,165946605,
T23F6.5NM_070032chrUn+16594809916595045416594809916595045413165948099,165948289,165948480,165948622,165948646,165948844,165949019,165949188,165949389,165949513,165949634,165950065,16595024 ...165948218,165948430,165948593,165948626,165948799,165948915,165949143,165949299,165949469,165949622,165949703,165950185,16595045 ...
MYH1NM_001081759chrUn+1012198081012222011012198081012222016101219808,101219892,101220123,101221230,101221767,101222171,101219865,101220051,101220273,101221590,101222076,101222201,
MYH1NM_001081759chrUn+1366248451366279081366248451366279088136624845,136624926,136625112,136626645,136626786,136626936,136627524,136627878,136624899,136625088,136625301,136626708,136626797,136627401,136627779,136627908,
MYH1NM_001081759chrUn+1463048691463070481463048691463070487146304869,146305127,146305582,146306221,146306582,146306838,146306928,146304959,146305184,146305714,146306479,146306597,146306895,146307048,
MYH1NM_001081759chrUn-1735571281735615141735571281735615143173557128,173557483,173561244,173557194,173557762,173561514,
MYH7NM_001081758chrUn-6841215684656068412156846560156841215,6841330,6842392,6842506,6843094,6843946,6844154,6844460,6844591,6845268,6845508,6845943,6846110,6846320,6846503,6841272,6841510,6842473,6842680,6843352,6843950,6844172,6844481,6844840,6845490,6845925,6846045,6846266,6846479,6846560,
MYH7NM_001081758chrUn-387004393870542138700439387054211338700439,38701706,38702234,38702948,38703167,38703527,38703650,38704276,38704545,38704722,38704929,38705176,38705283,38700496,38702051,38702315,38703065,38703443,38703641,38704001,38704315,38704569,38704872,38705016,38705233,38705421,
KLC2NM_001134775chrUn-1738501861738508131738501861738508131173850186,173850813,
KLC2NM_001134774chrUn+1379034361379043531379034361379043532137903436,137904242,137904102,137904353,

Note: all start coordinates in our database are 0-based, not 1-based. See explanation here.