Schema for estOrientInfo
  Database: calJac1    Primary Table: estOrientInfo    Row Count: 391,331   Data last updated: 2016-05-27
Format description: Extra information on ESTs - calculated by polyInfo program
On download server: MariaDB table dump directory
fieldexampleSQL type info description
bin 600smallint(5) unsigned range Indexing field to speed chromosome range queries.
chrom Contig0varchar(255) values Reference sequence chromosome or scaffold
chromStart 2056416int(10) unsigned range Start position in chromosome
chromEnd 2057094int(10) unsigned range End position in chromosome
name EH380431varchar(255) values Accession of EST
intronOrientation 0smallint(6) range Orientation of introns with respect to EST
sizePolyA 0smallint(6) range Number of trailing A's
revSizePolyA 0smallint(6) range Number of trailing A's on reverse strand
signalPos 0smallint(6) range Position of start of polyA signal relative to end of EST or 0 if no signal
revSignalPos 0smallint(6) range PolyA signal position on reverse strand if any

Connected Tables and Joining Fields
        calJac1.all_est.qName (via estOrientInfo.name)
      calJac1.intronEst.qName (via estOrientInfo.name)
      hgFixed.gbCdnaInfo.acc (via estOrientInfo.name)
      hgFixed.gbSeq.acc (via estOrientInfo.name)
      hgFixed.imageClone.acc (via estOrientInfo.name)

Sample Rows
 
binchromchromStartchromEndnameintronOrientationsizePolyArevSizePolyAsignalPosrevSignalPos
600Contig020564162057094EH38043100000
600Contig020565982057278EH38045600000
587Contig1274032274712EH38265300000
587Contig1274035274714EH38274800000
590Contig1732413739776EH38034400000
590Contig1739171739852EH38278400000
598Contig117326981733378EH38051300000
601Contig122046722205351EH38238400000
603Contig124076222408697EH38234100000
587Contig10321851322531EH38097400000

Note: all start coordinates in our database are 0-based, not 1-based. See explanation here.