Schema for estOrientInfo
  Database: calJac4    Primary Table: estOrientInfo    Row Count: 328,681   Data last updated: 2020-09-21
Format description: Extra information on ESTs - calculated by polyInfo program
On download server: MariaDB table dump directory
fieldexampleSQL type info description
bin 607smallint(5) unsigned range Indexing field to speed chromosome range queries.
chrom chr1varchar(255) values Reference sequence chromosome or scaffold
chromStart 2922232int(10) unsigned range Start position in chromosome
chromEnd 2922913int(10) unsigned range End position in chromosome
name EH381499varchar(255) values Accession of EST
intronOrientation 0smallint(6) range Orientation of introns with respect to EST
sizePolyA 0smallint(6) range Number of trailing A's
revSizePolyA 0smallint(6) range Number of trailing A's on reverse strand
signalPos 0smallint(6) range Position of start of polyA signal relative to end of EST or 0 if no signal
revSignalPos 0smallint(6) range PolyA signal position on reverse strand if any

Connected Tables and Joining Fields
        calJac4.all_est.qName (via estOrientInfo.name)
      calJac4.intronEst.qName (via estOrientInfo.name)
      hgFixed.gbCdnaInfo.acc (via estOrientInfo.name)
      hgFixed.gbSeq.acc (via estOrientInfo.name)
      hgFixed.imageClone.acc (via estOrientInfo.name)

Sample Rows
 
binchromchromStartchromEndnameintronOrientationsizePolyArevSizePolyAsignalPosrevSignalPos
607chr129222322922913EH38149900000
661chr11008606710086744EH38128400000
680chr11247718212477861EH38204200000
684chr11302309913023779EH38123100000
694chr11438357814384258EH38130600000
694chr11438358814384268EH38232500000
695chr11448877114489450EH38050500000
712chr11670467716705356EH38042200000
721chr11783222517832902EH38194800000
748chr12143530721435988EH38101800000

Note: all start coordinates in our database are 0-based, not 1-based. See explanation here.