Schema for estOrientInfo
  Database: cavPor3    Primary Table: estOrientInfo    Row Count: 26,107   Data last updated: 2016-06-18
Format description: Extra information on ESTs - calculated by polyInfo program
On download server: MariaDB table dump directory
fieldexampleSQL type info description
bin 585smallint(5) unsigned range Indexing field to speed chromosome range queries.
chrom chrMvarchar(255) values Reference sequence chromosome or scaffold
chromStart 4568int(10) unsigned range Start position in chromosome
chromEnd 4718int(10) unsigned range End position in chromosome
name AU083190varchar(255) values Accession of EST
intronOrientation 0smallint(6) range Orientation of introns with respect to EST
sizePolyA 0smallint(6) range Number of trailing A's
revSizePolyA 0smallint(6) range Number of trailing A's on reverse strand
signalPos 23smallint(6) range Position of start of polyA signal relative to end of EST or 0 if no signal
revSignalPos 0smallint(6) range PolyA signal position on reverse strand if any

Connected Tables and Joining Fields
        cavPor3.all_est.qName (via estOrientInfo.name)
      cavPor3.intronEst.qName (via estOrientInfo.name)
      hgFixed.gbCdnaInfo.acc (via estOrientInfo.name)
      hgFixed.gbSeq.acc (via estOrientInfo.name)
      hgFixed.imageClone.acc (via estOrientInfo.name)

Sample Rows
 
binchromchromStartchromEndnameintronOrientationsizePolyArevSizePolyAsignalPosrevSignalPos
585chrM45684718AU083190000230
585chrM66106851AU08320100000
585chrM95359858AU083259000110
585chrM1417514461AU08334200000
797scaffold_02787565727876091AU08317300000
831scaffold_03234854432354589AU083242-30000
1073scaffold_06400175064002389AU08331300000
1136scaffold_07228229272282728AU08332800000
1142scaffold_07302405573024383AU08323000000
1261scaffold_08863809888638435AU083314000023

Note: all start coordinates in our database are 0-based, not 1-based. See explanation here.