Schema for all_mrna
  Database: cb1    Primary Table: all_mrna    Row Count: 542   Data last updated: 2017-01-02
Format description: Summary info about a patSpace alignment
On download server: MariaDB table dump directory
fieldexampleSQL type info description
bin 75smallint(5) unsigned range Indexing field to speed chromosome range queries.
matches 644int(10) unsigned range Number of bases that match that aren't repeats
misMatches 0int(10) unsigned range Number of bases that don't match
repMatches 0int(10) unsigned range Number of bases that match but are part of repeats
nCount 0int(10) unsigned range Number of 'N' bases
qNumInsert 1int(10) unsigned range Number of inserts in query
qBaseInsert 1int(10) unsigned range Number of bases inserted in query
tNumInsert 3int(10) unsigned range Number of inserts in target
tBaseInsert 272011int(10) unsigned range Number of bases inserted in target
strand +char(2) values + or - for strand. First character query, second target (optional)
qName U48289varchar(255) values Query sequence name
qSize 645int(10) unsigned range Query sequence size
qStart 0int(10) unsigned range Alignment start position in query
qEnd 645int(10) unsigned range Alignment end position in query
tName chrUnvarchar(255) values Target sequence name
tSize 109024926int(10) unsigned range Target sequence size
tStart 2292071int(10) unsigned range Alignment start position in target
tEnd 2564726int(10) unsigned range Alignment end position in target
blockCount 5int(10) unsigned range Number of blocks in alignment
blockSizes 20,198,302,5,119,longblob   Size of each block
qStarts 0,20,218,520,526,longblob   Start of each block in query.
tStarts 2292071,2563415,2564299,256...longblob   Start of each block in target.

Connected Tables and Joining Fields
        cb1.all_est.qName (via all_mrna.qName)
      cb1.mrnaOrientInfo.name (via all_mrna.qName)
      cb1.xenoRefGene.name (via all_mrna.qName)
      cb1.xenoRefSeqAli.qName (via all_mrna.qName)
      hgFixed.gbCdnaInfo.acc (via all_mrna.qName)
      hgFixed.gbMiscDiff.acc (via all_mrna.qName)
      hgFixed.gbSeq.acc (via all_mrna.qName)
      hgFixed.gbWarn.acc (via all_mrna.qName)
      hgFixed.imageClone.acc (via all_mrna.qName)

Sample Rows
 
binmatchesmisMatchesrepMatchesnCountqNumInsertqBaseInserttNumInserttBaseInsertstrandqNameqSizeqStartqEndtNametSizetStarttEndblockCountblockSizesqStartstStarts
75644000113272011+U482896450645chrUn10902492622920712564726520,198,302,5,119,0,20,218,520,526,2292071,2563415,2564299,2564602,2564607,
6023337000004464-AF3155553362113348chrUn109024926230047823042795580,1485,739,244,289,14,594,2079,2818,3062,2300478,2301376,2302910,2303698,2303990,
754493000229530197-AF499438451104495chrUn1090249262378730291342012224,366,542,179,1214,262,920,211,197,57,116,205,16,240,606,1149,1328,2542,2804,3725,3936,4133,4190,4306,2378730,2379588,2380010,2380552,2905036,2906300,2906611,2907531,2908440,2910003,2911102,2913215,
61314870000010775+AY363116150101487chrUn1090249263737241373950311182,62,131,151,145,210,95,134,134,104,139,0,182,244,375,526,671,881,976,1110,1244,1348,3737241,3737472,3737579,3737754,3737950,3738439,3738694,3738836,3739018,3739211,3739364,
615372000002318-EF0902593720372chrUn10902492639582243958914393,155,124,0,93,248,3958224,3958583,3958790,
6281354000005190+AJ245633135401354chrUn109024926573405057355946101,144,243,570,196,100,0,101,245,488,1058,1254,5734050,5734196,5734384,5734678,5735297,5735494,
632167100000101733+AJ887994167101671chrUn109024926619427061976741191,124,489,52,9,80,91,275,151,100,209,0,91,215,704,756,765,845,936,1211,1362,1462,6194270,6194846,6195018,6195556,6195617,6195681,6195807,6195948,6197121,6197321,6197465,
6351472001006281-AY363117147601473chrUn109024926661477166165257134,241,134,153,297,447,67,3,137,378,512,665,962,1409,6614771,6614953,6615240,6615421,6615620,6615966,6616458,
64252800000145-AF5070225280528chrUn109024926759732475978972339,189,0,339,7597324,7597708,
652384000001813+DQ4820603840384chrUn109024926879921688004132321,63,0,321,8799216,8800350,

Note: all start coordinates in our database are 0-based, not 1-based. See explanation here.