Schema for all_mrna
  Database: cb3    Primary Table: all_mrna    Row Count: 545   Data last updated: 2016-12-31
Format description: Summary info about a patSpace alignment
On download server: MariaDB table dump directory
fieldexampleSQL type info description
bin 585smallint(5) unsigned range Indexing field to speed chromosome range queries.
matches 224int(10) unsigned range Number of bases that match that aren't repeats
misMatches 0int(10) unsigned range Number of bases that don't match
repMatches 0int(10) unsigned range Number of bases that match but are part of repeats
nCount 0int(10) unsigned range Number of 'N' bases
qNumInsert 0int(10) unsigned range Number of inserts in query
qBaseInsert 0int(10) unsigned range Number of bases inserted in query
tNumInsert 1int(10) unsigned range Number of inserts in target
tBaseInsert 1676int(10) unsigned range Number of bases inserted in target
strand +char(2) values + or - for strand. First character query, second target (optional)
qName DQ482074varchar(255) values Query sequence name
qSize 224int(10) unsigned range Query sequence size
qStart 0int(10) unsigned range Alignment start position in query
qEnd 224int(10) unsigned range Alignment end position in query
tName chrIvarchar(255) values Target sequence name
tSize 11274843int(10) unsigned range Target sequence size
tStart 66575int(10) unsigned range Alignment start position in target
tEnd 68475int(10) unsigned range Alignment end position in target
blockCount 2int(10) unsigned range Number of blocks in alignment
blockSizes 130,94,longblob   Size of each block
qStarts 0,130,longblob   Start of each block in query.
tStarts 66575,68381,longblob   Start of each block in target.

Connected Tables and Joining Fields
        cb3.all_est.qName (via all_mrna.qName)
      cb3.mrnaOrientInfo.name (via all_mrna.qName)
      cb3.xenoMrna.qName (via all_mrna.qName)
      cb3.xenoRefGene.name (via all_mrna.qName)
      cb3.xenoRefSeqAli.qName (via all_mrna.qName)
      hgFixed.gbCdnaInfo.acc (via all_mrna.qName)
      hgFixed.gbMiscDiff.acc (via all_mrna.qName)
      hgFixed.gbSeq.acc (via all_mrna.qName)
      hgFixed.gbWarn.acc (via all_mrna.qName)
      hgFixed.imageClone.acc (via all_mrna.qName)

Sample Rows
 
binmatchesmisMatchesrepMatchesnCountqNumInsertqBaseInserttNumInserttBaseInsertstrandqNameqSizeqStartqEndtNametSizetStarttEndblockCountblockSizesqStartstStarts
5852240000011676+DQ4820742240224chrI1127484366575684752130,94,0,130,66575,68381,
5853140000021586+DQ4820753140314chrI1127484366575684753130,90,94,0,130,220,66575,68094,68381,
5852250000011116-DQ4820902260225chrI11274843107907109248277,148,1,78,107907,109100,
5852490000021092-DQ4820912500249chrI11274843107907109248377,24,148,1,78,102,107907,108200,109100,
6092312000009537+AY5895972354202332chrI11274843317171231745611065,166,119,251,207,143,207,231,324,599,20,85,251,370,621,828,971,1178,1409,1733,3171712,3171827,3172039,3172202,3172504,3172820,3173008,3173263,3173594,3173962,
60918873000081589+AF030037189001890chrI11274843319416131976409159,204,176,229,237,425,174,161,125,0,159,363,539,768,1005,1430,1604,1765,3194161,3195145,3195391,3195611,3195888,3196169,3196643,3196865,3197515,
6202877000005234+AY5896062913202897chrI11274843469322446963356193,906,159,592,213,814,20,213,1119,1278,1870,2083,4693224,4693465,4694415,4694618,4695259,4695521,
6262630000021135-DQ4820762640263chrI1127484353905575391955392,136,35,1,93,229,5390557,5391284,5391920,
6263071000031090-DQ4820773090308chrI1127484353905575391955492,136,45,35,1,93,229,274,5390557,5391284,5391773,5391920,
6263320000031066-DQ4820783330332chrI1127484353905575391955492,69,136,35,1,93,162,298,5390557,5391150,5391284,5391920,

Note: all start coordinates in our database are 0-based, not 1-based. See explanation here.