Schema for xenoRefFlat
  Database: chrPic1    Primary Table: xenoRefFlat    Row Count: 525,053   Data last updated: 2020-08-18
Format description: A gene prediction with additional geneName field.
On download server: MariaDB table dump directory
fieldexampleSQL type description
geneName SAMD15varchar(255) Name of gene as it appears in genome browser.
name NM_001010860varchar(255) Name of gene
chrom JH584728varchar(255) Reference sequence chromosome or scaffold
strand +char(1) + or - for strand
txStart 4344167int(10) unsigned Transcription start position (or end position for minus strand item)
txEnd 4344814int(10) unsigned Transcription end position (or start position for minus strand item)
cdsStart 4344167int(10) unsigned Coding region start (or end position for minus strand item)
cdsEnd 4344814int(10) unsigned Coding region end (or start position for minus strand item)
exonCount 3int(10) unsigned Number of exons
exonStarts 4344167,4344244,4344718,longblob Exon start positions (or end positions for minus strand item)
exonEnds 4344226,4344251,4344814,longblob Exon end positions (or start positions for minus strand item)

Connected Tables and Joining Fields
        chrPic1.xenoMrna.qName (via xenoRefFlat.name)
      chrPic1.xenoRefGene.name (via xenoRefFlat.name)
      chrPic1.xenoRefSeqAli.qName (via xenoRefFlat.name)
      hgFixed.gbCdnaInfo.acc (via xenoRefFlat.name)
      hgFixed.gbSeq.acc (via xenoRefFlat.name)
      hgFixed.imageClone.acc (via xenoRefFlat.name)

Sample Rows
 
geneNamenamechromstrandtxStarttxEndcdsStartcdsEndexonCountexonStartsexonEnds
SAMD15NM_001010860JH584728+434416743448144344167434481434344167,4344244,4344718,4344226,4344251,4344814,
PEAR1NM_001101300JH584741+2375192861622375192861626237519,251502,252618,259912,285737,286123,237657,251580,252732,259996,285782,286162,
rpap1.SNM_001091300JH584486-304688230619753046882306197563046882,3047419,3047947,3047994,3060493,3061852,3046986,3047514,3047949,3048102,3060646,3061975,
ttx-1NM_001029041JH584519+8494028530568494028530562849402,853029,849546,853056,
Nsun2NM_001108403JH584642+1898143196062018981431960620191898143,1899427,1900431,1902309,1903536,1904409,1907624,1912868,1918214,1920114,1923939,1930060,1930907,1935072,1935169,1935658, ...1898161,1899583,1900532,1902411,1903543,1904478,1907709,1913061,1918290,1920244,1924013,1930189,1931000,1935162,1935171,1935794, ...
Zfp644NM_026856JH584690-2484538250721224860732507212232484538,2484809,2485106,2485146,2485257,2485427,2485481,2485525,2485707,2485849,2486034,2486870,2503612,2504054,2504423,2504966, ...2484689,2485022,2485131,2485165,2485391,2485442,2485514,2485647,2485737,2485876,2486266,2486950,2504021,2504213,2504954,2505143, ...
Cryba4NM_021351JH584690-686211768653016862117686530136862117,6863153,6865214,6862264,6863297,6865301,
ChmlNM_021350JH584484+3780308392082037803083920814183780308,3786082,3797251,3808860,3814516,3815049,3820022,3820752,3820878,3823375,3873872,3882644,3882765,3886047,3891773,3904368, ...3780374,3786087,3797309,3808941,3814576,3815051,3820140,3820871,3820882,3823596,3873948,3882750,3882766,3886111,3891863,3904470, ...
PIP4K2CNM_001146259JH584731+7428167713127428167713128742816,757444,764962,766396,768165,769539,770203,771240,742915,757522,765112,766438,768276,769593,770308,771312,
ZNF502NM_001103101JH585085+1802924233621802924233623180292,327497,423314,180367,327551,423362,

Note: all start coordinates in our database are 0-based, not 1-based. See explanation here.