Schema for xenoRefFlat
  Database: ci1    Primary Table: xenoRefFlat    Row Count: 212,629   Data last updated: 2020-08-21
Format description: A gene prediction with additional geneName field.
On download server: MariaDB table dump directory
fieldexampleSQL type info description
geneName idh1varchar(255) values Name of gene as it appears in genome browser.
name NM_001019820varchar(255) values Name of gene
chrom Scaffold_132varchar(255) values Reference sequence chromosome or scaffold
strand -char(1) values + or - for strand
txStart 84110int(10) unsigned range Transcription start position (or end position for minus strand item)
txEnd 86853int(10) unsigned range Transcription end position (or start position for minus strand item)
cdsStart 84110int(10) unsigned range Coding region start (or end position for minus strand item)
cdsEnd 86853int(10) unsigned range Coding region end (or start position for minus strand item)
exonCount 5int(10) unsigned range Number of exons
exonStarts 84110,85997,86118,86316,86742,longblob   Exon start positions (or end positions for minus strand item)
exonEnds 84143,86052,86229,86562,86853,longblob   Exon end positions (or start positions for minus strand item)

Connected Tables and Joining Fields
        ci1.xenoMrna.qName (via xenoRefFlat.name)
      ci1.xenoRefGene.name (via xenoRefFlat.name)
      ci1.xenoRefSeqAli.qName (via xenoRefFlat.name)
      hgFixed.gbCdnaInfo.acc (via xenoRefFlat.name)
      hgFixed.gbSeq.acc (via xenoRefFlat.name)
      hgFixed.imageClone.acc (via xenoRefFlat.name)

Sample Rows
 
geneNamenamechromstrandtxStarttxEndcdsStartcdsEndexonCountexonStartsexonEnds
idh1NM_001019820Scaffold_132-84110868538411086853584110,85997,86118,86316,86742,84143,86052,86229,86562,86853,
PHDPNM_079110Scaffold_55+3003263015163003263015162300326,301471,300467,301516,
SLC5A11NM_001352238Scaffold_541+32933387873293338787932933,33828,34797,34837,36387,36812,37698,38125,38644,33002,33993,34829,34842,36557,37007,37821,38243,38787,
agbl2NM_001079063Scaffold_27-1775201799991775201799996177520,178006,178514,179115,179530,179960,177574,178089,178632,179172,179614,179999,
Cdc37NM_016742Scaffold_195+1300601322481300601322484130060,130678,131541,132146,130204,130741,131625,132248,
celf3.SNM_001087226Scaffold_61-1423691513011423691512988142369,142821,145618,146097,146935,147287,148416,151153,142497,142966,145744,146199,147042,147336,148499,151301,
cyp-37A1NM_064538Scaffold_21+3673203690463673203690462367320,369016,367431,369046,
cyp-37A1NM_064538Scaffold_46-1171161186101171161186104117116,117545,118325,118493,117242,117602,118409,118610,
efhd-1NM_064560Scaffold_199+78477790067847779006278477,78967,78624,79006,
M01F1.3NM_065321Scaffold_1317+747286037472859157472,7661,8197,8304,8492,7610,7817,8230,8373,8603,

Note: all start coordinates in our database are 0-based, not 1-based. See explanation here.