Schema for ensGene
  Database: ci2    Primary Table: ensGene    Row Count: 20,225   Data last updated: 2010-11-16
Format description: Ensembl gene predictions.
On download server: MariaDB table dump directory
fieldexampleSQL type info description
bin 585smallint(5) unsigned range Indexing field to speed chromosome range queries.
name ENSCINT00000002299varchar(255) values Ensembl transcript ID
chrom chr01pvarchar(255) values Reference sequence chromosome or scaffold
strand -char(1) values + or - for strand
txStart 9136int(10) unsigned range Transcription start position (or end position for minus strand item)
txEnd 25626int(10) unsigned range Transcription end position (or start position for minus strand item)
cdsStart 9136int(10) unsigned range Coding region start (or end position for minus strand item)
cdsEnd 25513int(10) unsigned range Coding region end (or start position for minus strand item)
exonCount 8int(10) unsigned range Number of exons
exonStarts 9136,10030,23628,24106,2438...longblob   Exon start positions (or end positions for minus strand item)
exonEnds 9284,10130,23779,24274,2446...longblob   Exon end positions (or start positions for minus strand item)
score 0int(11) range always 0 for Ensembl genes
name2 ENSCING00000013876varchar(255) values Ensembl gene ID
cdsStartStat incmplenum('none', 'unk', 'incmpl', 'cmpl') values Status of CDS start annotation (none, unknown, incomplete, or complete)
cdsEndStat cmplenum('none', 'unk', 'incmpl', 'cmpl') values Status of CDS end annotation (none, unknown, incomplete, or complete)
exonFrames 2,1,0,0,0,1,2,0,longblob   Exon frame {0,1,2}, or -1 if no frame for exon

Connected Tables and Joining Fields
        ci2.ensGtp.transcript (via ensGene.name)
      ci2.ensPep.name (via ensGene.name)
      ci2.ensemblSource.name (via ensGene.name)
      ci2.ensemblToGeneName.name (via ensGene.name)
      knownGeneV39.knownToEnsembl.value (via ensGene.name)

Sample Rows
 
binnamechromstrandtxStarttxEndcdsStartcdsEndexonCountexonStartsexonEndsscorename2cdsStartStatcdsEndStatexonFrames
585ENSCINT00000002299chr01p-91362562691362551389136,10030,23628,24106,24383,24738,24918,25427,9284,10130,23779,24274,24464,24812,24977,25626,0ENSCING00000013876incmplcmpl2,1,0,0,0,1,2,0,
585ENSCINT00000025534chr01p-10417326161041925513710417,24106,24383,24738,24933,25427,32554,10533,24274,24464,24812,24977,25637,32616,0ENSCING00000013876incmplcmpl2,2,2,0,1,0,-1,
585ENSCINT00000005287chr01p-138512089415092208531013851,14991,15405,15559,15976,16672,19012,19817,20295,20813,14569,15120,15463,15656,16135,16843,19192,19941,20479,20894,0ENSCING00000013875incmplcmpl-1,2,1,0,0,0,0,2,1,0,
585ENSCINT00000005310chr01p-609468216760946821673660946,61466,61883,62360,63056,64285,65025,65339,65861,66439,66908,67185,67748,69184,69527,69838,70402,70969,71615,72279,73018,73 ...61045,61595,62039,62519,63227,64465,65149,65523,66092,66626,66973,67236,67804,69364,69621,70058,70594,71134,71776,72426,73143,73 ...0ENSCING00000002596incmplincmpl0,0,0,0,0,0,2,1,1,0,1,1,2,2,1,0,0,0,1,1,2,0,0,0,2,1,1,0,1,0,2,0,1,1,2,0,
585ENSCINT00000005322chr01p-609468216760946821673260946,61466,61883,62360,63056,64285,65025,65339,65861,66439,67159,69184,69527,69838,70402,70969,71606,72279,73018,73602,74572,75 ...61045,61595,62039,62519,63227,64465,65149,65523,66092,66639,67309,69364,69621,70058,70594,71128,71776,72426,73143,73781,74686,75 ...0ENSCING00000002596incmplincmpl0,0,0,0,0,0,2,1,1,2,2,2,1,0,0,0,1,1,2,0,0,0,2,1,0,1,2,0,1,1,2,0,
585ENSCINT00000005317chr01p-609468178460946817843460946,61466,61883,62360,63056,64285,65025,65339,65861,66439,66908,67185,67748,69184,69527,69838,70402,70969,71606,72279,73018,73 ...61045,61595,62039,62519,63227,64465,65149,65523,66092,66626,66973,67236,67804,69364,69621,70058,70594,71128,71776,72426,73143,73 ...0ENSCING00000002596incmplincmpl0,0,0,0,0,0,2,1,1,0,1,1,2,2,1,0,0,0,1,1,2,0,0,0,2,1,0,1,2,0,1,1,1,0,
586ENSCINT00000011907chr01p+1323251346621323461343492132325,133951,132470,134662,0ENSCING00000013874cmplincmpl0,1,
586ENSCINT00000005381chr01p-1483181518411492381518416148318,149221,149628,150375,151267,151772,148739,149325,149807,150560,151464,151841,0ENSCING00000002645incmplincmpl-1,0,1,2,0,0,
586ENSCINT00000005389chr01p-15212516095915305816085613152125,153538,153970,154520,154904,155548,157298,157917,158465,158818,159667,160009,160802,153178,153718,154129,154663,155115,155676,157457,158021,158548,159321,159803,160042,160959,0ENSCING00000002652incmplcmpl0,0,0,1,0,1,1,2,0,1,0,0,0,
586ENSCINT00000025533chr01p-1521251609591521401608563152125,160009,160802,152233,160042,160959,0ENSCING00000002652incmplcmpl0,0,0,

Note: all start coordinates in our database are 0-based, not 1-based. See explanation here.