Schema for mrnaOrientInfo
  Database: ci2    Primary Table: mrnaOrientInfo    Row Count: 9,806   Data last updated: 2020-08-21
Format description: Extra information on ESTs - calculated by polyInfo program
On download server: MariaDB table dump directory
fieldexampleSQL type info description
bin 585smallint(5) unsigned range Indexing field to speed chromosome range queries.
chrom chr01pvarchar(255) values Reference sequence chromosome or scaffold
chromStart 13853int(10) unsigned range Start position in chromosome
chromEnd 20860int(10) unsigned range End position in chromosome
name AK112464varchar(255) values Accession of EST
intronOrientation 8smallint(6) range Orientation of introns with respect to EST
sizePolyA 16smallint(6) range Number of trailing A's
revSizePolyA 0smallint(6) range Number of trailing A's on reverse strand
signalPos 34smallint(6) range Position of start of polyA signal relative to end of EST or 0 if no signal
revSignalPos 0smallint(6) range PolyA signal position on reverse strand if any

Connected Tables and Joining Fields
        ci2.all_mrna.qName (via mrnaOrientInfo.name)
      ci2.refFlat.name (via mrnaOrientInfo.name)
      ci2.refGene.name (via mrnaOrientInfo.name)
      ci2.refSeqAli.qName (via mrnaOrientInfo.name)
      hgFixed.gbCdnaInfo.acc (via mrnaOrientInfo.name)
      hgFixed.gbSeq.acc (via mrnaOrientInfo.name)
      hgFixed.imageClone.acc (via mrnaOrientInfo.name)
      hgFixed.refLink.mrnaAcc (via mrnaOrientInfo.name)
      hgFixed.refSeqStatus.mrnaAcc (via mrnaOrientInfo.name)
      hgFixed.refSeqSummary.mrnaAcc (via mrnaOrientInfo.name)
      knownGeneV39.kgXref.refseq (via mrnaOrientInfo.name)
      knownGeneV39.knownToRefSeq.value (via mrnaOrientInfo.name)

Sample Rows
 
binchromchromStartchromEndnameintronOrientationsizePolyArevSizePolyAsignalPosrevSignalPos
585chr01p1385320860AK1124648160340
585chr01p5154451995AK114304012000
585chr01p5154452168AK1141910160420
586chr01p152125160286AK11325811140360
586chr01p156634156818AK174899018000
586chr01p163336168550AK116012816000
586chr01p171853173006AK11526904000
586chr01p183865188480AK115898618000
586chr01p189838192659AK115766315000
586chr01p248835249092AK175023018200

Note: all start coordinates in our database are 0-based, not 1-based. See explanation here.