Schema for ensGene
  Database: ci3    Primary Table: ensGene    Row Count: 17,784   Data last updated: 2021-05-25
Format description: Ensembl gene predictions.
On download server: MariaDB table dump directory
fieldexampleSQL type info description
bin 585smallint(5) unsigned range Indexing field to speed chromosome range queries.
name ENSCINT00000030147.1varchar(255) values Ensembl transcript ID
chrom chr1varchar(255) values Reference sequence chromosome or scaffold
strand +char(1) values + or - for strand
txStart 1635int(10) unsigned range Transcription start position (or end position for minus strand item)
txEnd 1902int(10) unsigned range Transcription end position (or start position for minus strand item)
cdsStart 1902int(10) unsigned range Coding region start (or end position for minus strand item)
cdsEnd 1902int(10) unsigned range Coding region end (or start position for minus strand item)
exonCount 1int(10) unsigned range Number of exons
exonStarts 1635,longblob   Exon start positions (or end positions for minus strand item)
exonEnds 1902,longblob   Exon end positions (or start positions for minus strand item)
score 0int(11) range always 0 for Ensembl genes
name2 ENSCING00000017842.1varchar(255) values Ensembl gene ID
cdsStartStat noneenum('none', 'unk', 'incmpl', 'cmpl') values Status of CDS start annotation (none, unknown, incomplete, or complete)
cdsEndStat noneenum('none', 'unk', 'incmpl', 'cmpl') values Status of CDS end annotation (none, unknown, incomplete, or complete)
exonFrames -1,longblob   Exon frame {0,1,2}, or -1 if no frame for exon

Connected Tables and Joining Fields
        ci3.ensGtp.transcript (via ensGene.name)
      ci3.ensPep.name (via ensGene.name)
      ci3.ensemblSource.name (via ensGene.name)
      ci3.ensemblToGeneName.name (via ensGene.name)
      knownGeneV39.knownToEnsembl.value (via ensGene.name)

Sample Rows
 
binnamechromstrandtxStarttxEndcdsStartcdsEndexonCountexonStartsexonEndsscorename2cdsStartStatcdsEndStatexonFrames
585ENSCINT00000030147.1chr1+163519021902190211635,1902,0ENSCING00000017842.1nonenone-1,
585ENSCINT00000005493.3chr1-421820394421820356314218,4851,5299,5727,6243,7032,7557,8105,8555,9080,9393,9991,10190,10470,10613,11039,11668,12093,13388,13777,14511,15702,15993,16 ...4415,5005,5479,5889,6471,7195,7721,8186,8750,9182,9459,10100,10311,10474,10691,11223,11830,12205,13431,14094,14620,15815,16021,1 ...0ENSCING00000016550.2incmplcmpl1,0,0,0,0,2,0,0,0,0,0,2,1,0,0,2,2,1,0,1,0,1,0,0,2,0,0,0,0,1,0,
585ENSCINT00000028836.2chr1+235173415523584341541023517,24119,24626,25070,26149,26936,32785,33179,33658,34112,23594,24216,24751,25206,26268,27034,32884,33305,33754,34155,0ENSCING00000016539.2cmplincmpl0,1,2,1,2,1,0,0,0,0,
585ENSCINT00000005509.3chr1-371076041237107596944537107,37354,38063,38433,39123,39526,39714,39863,40048,40298,40825,41538,41937,42559,43015,43524,43939,44249,44813,45349,46191,46 ...37165,37473,38181,38563,39289,39662,39778,39874,40075,40482,41001,41762,42095,42674,43242,43677,44116,44361,44972,45478,46331,46 ...0ENSCING00000002700.3incmplcmpl2,0,2,1,0,2,1,2,2,1,2,0,1,0,1,1,1,0,0,0,1,0,2,2,2,1,0,0,0,2,2,2,1,1,1,1,0,0,0,0,0,2,1,0,-1,
585ENSCINT00000005526.3chr1-62405669036279166903562405,63303,64048,64562,65129,63033,63403,64213,64774,66903,0ENSCING00000002712.4cmplincmpl1,0,0,1,0,
585ENSCINT00000005557.3chr1-67640736156764073615867640,68534,69046,69732,70497,70988,71551,73470,67656,68655,69197,69851,70588,71137,71725,73615,0ENSCING00000002720.3incmplincmpl2,1,0,1,0,1,1,0,
585ENSCINT00000005569.3chr1-78717830707879283070578717,79197,79561,80167,83036,78888,79329,79735,81471,83070,0ENSCING00000002729.3cmplincmpl0,0,0,1,0,
585ENSCINT00000037081.1chr1+83504857618465285691483504,84631,84937,85647,83639,84792,84972,85761,0ENSCING00000023948.1cmplcmpl-1,0,2,1,
585ENSCINT00000031177.1chr1-96239970359623997035296239,96494,96253,97035,0ENSCING00000024862.1incmplcmpl1,0,
585ENSCINT00000030689.1chr1-9802310201598023102015798023,98646,98765,99227,99774,101186,101929,98045,98735,98808,99306,99934,101286,102015,0ENSCING00000013867.2cmplcmpl2,0,2,1,0,2,0,

Note: all start coordinates in our database are 0-based, not 1-based. See explanation here.