Schema for xenoRefFlat
  Database: ci3    Primary Table: xenoRefFlat    Row Count: 84,144   Data last updated: 2017-04-25
Format description: A gene prediction with additional geneName field.
On download server: MariaDB table dump directory
fieldexampleSQL type info description
geneName Arfgef1varchar(255) values Name of gene as it appears in genome browser.
name NM_001102430varchar(255) values Name of gene
chrom chr1varchar(255) values Reference sequence chromosome or scaffold
strand -char(1) values + or - for strand
txStart 38483int(10) unsigned range Transcription start position (or end position for minus strand item)
txEnd 57000int(10) unsigned range Transcription end position (or start position for minus strand item)
cdsStart 38483int(10) unsigned range Coding region start (or end position for minus strand item)
cdsEnd 57000int(10) unsigned range Coding region end (or start position for minus strand item)
exonCount 25int(10) unsigned range Number of exons
exonStarts 38483,39123,40396,40832,415...longblob   Exon start positions (or end positions for minus strand item)
exonEnds 38563,39199,40477,40997,417...longblob   Exon end positions (or start positions for minus strand item)

Connected Tables and Joining Fields
        ci3.xenoRefGene.name (via xenoRefFlat.name)
      ci3.xenoRefSeqAli.qName (via xenoRefFlat.name)
      hgFixed.gbCdnaInfo.acc (via xenoRefFlat.name)
      hgFixed.gbSeq.acc (via xenoRefFlat.name)
      hgFixed.imageClone.acc (via xenoRefFlat.name)

Sample Rows
 
geneNamenamechromstrandtxStarttxEndcdsStartcdsEndexonCountexonStartsexonEnds
Arfgef1NM_001102430chr1-384835700038483570002538483,39123,40396,40832,41540,41952,42043,42572,43024,43534,43943,44307,44815,46194,46825,47636,48175,50685,51217,51221,51904,52 ...38563,39199,40477,40997,41711,42012,42054,42683,43243,43675,44042,44363,44984,46302,46967,47710,48337,50877,51220,51353,52002,52 ...
TLE4NM_001282760chrUn_NW_004190506v1+7237157363497350087363499723715,724354,724498,735008,735221,735438,735631,735899,736250,723811,724420,724543,735173,735366,735553,735829,736079,736349,
GLRX3NM_001035101chr3+318138031844483181380318444853181380,3182918,3183597,3184208,3184334,3181458,3183093,3183632,3184280,3184448,
DHRS11NM_001035088chr10+293072629367892930726293678932930726,2936519,2936663,2930840,2936651,2936789,
zgc:162239NM_001082815chr4+423528542375884235285423758844235285,4236658,4237167,4237531,4235486,4236745,4237308,4237588,
PAN2NM_001079610chrUn_NW_004190374v1-425195188042519518801242519,42834,42957,43108,43662,44275,44877,45464,48308,49752,50905,51802,42553,42901,43048,43254,43834,44314,44991,45566,48368,49827,50917,51880,
LSM1NM_014462chr4-323731532375943237315323759413237315,3237594,
PYCR2NM_013328chrUn_NW_004190441v1+3014083028363014083028364301408,301889,302313,302664,301477,302000,302399,302836,
SLC35B2NM_001286510chr11+303872730412753038727304127563038727,3039112,3039745,3039940,3040379,3041068,3038837,3039272,3039802,3040006,3040529,3041275,
SLC35B2NM_001286509chr11+303872730412753038727304127563038727,3039112,3039745,3039940,3040379,3041068,3038837,3039272,3039802,3040006,3040529,3041275,

Note: all start coordinates in our database are 0-based, not 1-based. See explanation here.