Schema for mrnaOrientInfo
  Database: criGri1    Primary Table: mrnaOrientInfo    Row Count: 71,566   Data last updated: 2020-05-06
Format description: Extra information on ESTs - calculated by polyInfo program
On download server: MariaDB table dump directory
fieldexampleSQL type info description
bin 585smallint(5) unsigned range Indexing field to speed chromosome range queries.
chrom AMDS01095795varchar(255) values Reference sequence chromosome or scaffold
chromStart 0int(10) unsigned range Start position in chromosome
chromEnd 147int(10) unsigned range End position in chromosome
name JP063819varchar(255) values Accession of EST
intronOrientation 0smallint(6) range Orientation of introns with respect to EST
sizePolyA 0smallint(6) range Number of trailing A's
revSizePolyA 2smallint(6) range Number of trailing A's on reverse strand
signalPos 0smallint(6) range Position of start of polyA signal relative to end of EST or 0 if no signal
revSignalPos 0smallint(6) range PolyA signal position on reverse strand if any

Connected Tables and Joining Fields
        criGri1.all_mrna.qName (via mrnaOrientInfo.name)
      criGri1.refFlat.name (via mrnaOrientInfo.name)
      criGri1.refGene.name (via mrnaOrientInfo.name)
      criGri1.refSeqAli.qName (via mrnaOrientInfo.name)
      hgFixed.gbCdnaInfo.acc (via mrnaOrientInfo.name)
      hgFixed.gbSeq.acc (via mrnaOrientInfo.name)
      hgFixed.imageClone.acc (via mrnaOrientInfo.name)
      hgFixed.refLink.mrnaAcc (via mrnaOrientInfo.name)
      hgFixed.refSeqStatus.mrnaAcc (via mrnaOrientInfo.name)
      hgFixed.refSeqSummary.mrnaAcc (via mrnaOrientInfo.name)
      knownGeneV39.kgXref.refseq (via mrnaOrientInfo.name)
      knownGeneV39.knownToRefSeq.value (via mrnaOrientInfo.name)

Sample Rows
 
binchromchromStartchromEndnameintronOrientationsizePolyArevSizePolyAsignalPosrevSignalPos
585AMDS010957950147JP06381900200
585AMDS010957950147JP06382200200
585AMDS010957950182JI87511000100
585AMDS010957950182JI87511200300
585AMDS01095795147349JP06382400000
585AMDS01095795148525JP06382100000
585AMDS0109991514162302JI87575100000
585AMDS0111473456724690JP065591120000
585AMDS0111473456724697JI889754120000
585AMDS0111473470227465JI87914300000

Note: all start coordinates in our database are 0-based, not 1-based. See explanation here.